1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CATCCCTCTCTCTCTCCTCGCTTCTCTCTCTATCGCAGGCGAAGGCGAAGGCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAGgtgaggcctcctcctccgccgtctatctgtatctctgtctgtagctcagcgtcgggcccggttcaatccacagctcccccggggtcatctgcgctcggct...
species | Oryza sativa |
transcript | LOC_Os07g25710.4 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAG ATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCNNNNNNNGGAAAATCGAGTCEST: gi|66915305|gb|CX102153.1|CX102153
genomic: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAGgtgaggcctc ... tttgttgcagATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCTTTTTTTGGAAAATCGAGTC
EST: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAG ATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCNNNNNNNNGGAAAATCGAGTEST: gi|58689413|gb|CK078100.1|CK078100
genomic: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAGgtgaggcctc ... tttgttgcagATGTGTCAGCCCTAGGAGAGGAGAAGCTTTC-TTTTTTTGGAAAATCGAGT
EST: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAG ATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCNNNNNNNGGAAAATCGAGTCEST: gi|29613089|gb|CB618102.1|CB618102
genomic: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAGgtgaggcctc ... tttgttgcagATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCTTTTTTTGGAAAATCGAGTC
EST: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAG ATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCNNNNNNNGGAAAATCGAGTCEST: gi|13420508|gb|AU174598.1|AU174598
genomic: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAGgtgaggcctc ... tttgttgcagATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCTTTTTTTGGAAAATCGAGTC
EST: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAG ATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCNNNNNNNGGAAAATCGAGTCEST: gi|29673025|gb|CB669300.1|CB669300
genomic: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAGgtgaggcctc ... tttgttgcagATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCTTTTTTTGGAAAATCGAGTC
EST: GCGACCGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAG ATGTGTCAGCCCTAGGAGAGGAGAACCTTTCNNNNNNNGGAAAATCGAGTCEST: gi|88386640|gb|CI682782.1|CI682782
genomic: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAGgtgaggcctc ... tttgttgcagATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCTTTTTTTGGAAAATCGAGTC
EST: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAG ATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCNNNNNNNGGAAAATCGAGTCEST: gi|58663904|gb|CK052590.1|CK052590
genomic: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAGgtgaggcctc ... tttgttgcagATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCTTTTTTTGGAAAATCGAGTC
EST: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAG ATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCNNNNNNNGGAAAATCGAGTC
genomic: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAGgtgaggcctc ... tttgttgcagATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCTTTTTTTGGAAAATCGAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCCCTCTCTCTCTCCTCGCTTCTCTCTCTATCGCAGGCGAAGGCGAAGGCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAGgtgaggcctcctcctccgccgtctatctgtatctctgtctgtagctcagcgtcgggcccggttcaatccacagctcccccggggtcatctgcgctcggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC