1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCGAAGCTGGTGGAGGTGACGCAGCTCTTCTCCCGCTTCAAGGCAGCCTTCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccccgtggatctcgtccgctcctgctgcgttgaaatattcgattctttttatcgctatttcgtccaagtttgttcttgtttcgtcggtgtagg...
species | Oryza sativa |
transcript | LOC_Os07g25420.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACAEST: gi|88688587|gb|CI732163.1|CI732163
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACA
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|8856245|gb|AU093563.1|AU093563
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGNCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88412237|gb|CI573513.1|CI573513
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: CGCCAGGAACAACTTCGACACCTGCGTAGACCTGCTGTCGCAGCCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCEST: gi|33819689|gb|CF335663.1|CF335663
genomic: CGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAG-CTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACC
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88309199|gb|CI655207.1|CI655207
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|33658971|gb|CF281584.1|CF281584
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACTATTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTTACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88333830|gb|CI643862.1|CI643862
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88424460|gb|CI608046.1|CI608046
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCAAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88328055|gb|CI649853.1|CI649853
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|58681161|gb|CK069848.1|CK069848
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88364221|gb|CI612170.1|CI612170
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCC-AGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88345880|gb|CI632353.1|CI632353
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGCTTCCC-AGCCTTCCTCCATCATTTCAGCAGACACCEST: gi|88358913|gb|CI619417.1|CI619417
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAG-TTCCCCAGCCTTCCTCCATCATTTCAGCAGACACC
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88737020|gb|CI760528.1|CI760528
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|86905581|gb|CI287146.1|CI287146
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|58600822|gb|CK011350.1|CK011350
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88348768|gb|CI631462.1|CI631462
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|2427780|gb|C72243.1|C72243
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|568760|gb|D39609.1|D39609
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTNACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88737992|gb|CI761500.1|CI761500
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88395474|gb|CI612996.1|CI612996
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88377414|gb|CI602899.1|CI602899
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88391840|gb|CI603359.1|CI603359
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88726404|gb|CI750059.1|CI750059
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|33654136|gb|CF276750.1|CF276750
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88745467|gb|CI768827.1|CI768827
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88305511|gb|CI630673.1|CI630673
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|218496609|gb|FG945909.1|FG945909
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCA-CTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCGTTTCAGCAGACACCGEST: gi|88393359|gb|CI618247.1|CI618247
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88305623|gb|CI631990.1|CI631990
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGNCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|58586987|gb|CF985295.1|CF985295
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88723691|gb|CI747201.1|CI747201
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88744040|gb|CI767400.1|CI767400
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88392419|gb|CI612893.1|CI612893
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|218495940|gb|FG948496.1|FG948496
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCGTTTCAGCAGACACCGEST: gi|218498577|gb|FG966054.1|FG966054
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCGTTTCAGCAGACACCGEST: gi|88326392|gb|CI659822.1|CI659822
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCGEST: gi|88383951|gb|CI631841.1|CI631841
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
EST: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAG GTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
genomic: TCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccc ... ccttgtgcagGTCCGCCTCACCAAGTTCCCCAGCCTTCCTCCATCATTTCAGCAGACACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCGAAGCTGGTGGAGGTGACGCAGCTCTTCTCCCGCTTCAAGGCAGCCTTCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgtcgatcccccgtggatctcgtccgctcctgctgcgttgaaatattcgattctttttatcgctatttcgtccaagtttgttcttgtttcgtcggtgtagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtcggtg