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TCCGCCGCCAACGATCTCCGATCGAGACAAACCCTAGCCACGCCCATTGCCTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctctctccctctctctctctttctctctctgcctcctctctctgtggctgcctgcgcatccgtctcccatcccaacgtgtcggaaaagccatcg...
species | Oryza sativa |
transcript | LOC_Os07g22720.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88386942|gb|CI629269.1|CI629269
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTATACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88386965|gb|CI629292.1|CI629292
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTATACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88316027|gb|CI618903.1|CI618903
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88719018|gb|CI742528.1|CI742528
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88354508|gb|CI628879.1|CI628879
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGEST: gi|88345753|gb|CI631021.1|CI631021
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCG
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTATACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|86909491|gb|CI304683.1|CI304683
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGACATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88723264|gb|CI746774.1|CI746774
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88400796|gb|CI616801.1|CI616801
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|117233831|gb|CT842341.1|CT842341
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88337731|gb|CI632233.1|CI632233
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTEST: gi|88351581|gb|CI628801.1|CI628801
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACT
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTATACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88337819|gb|CI632321.1|CI632321
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTNGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTATACAATGCTCTACACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88301479|gb|CI597172.1|CI597172
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88353015|gb|CI630193.1|CI630193
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTTCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGEST: gi|88397241|gb|CI580751.1|CI580751
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAG
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88386898|gb|CI629225.1|CI629225
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCNATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGGGGAGTTCACACAATGCTCEST: gi|88329570|gb|CI650024.1|CI650024
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTACACTGTGAGCGTTCCTGGCCTCGTGCGEST: gi|568812|gb|D39661.1|D39661
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTC-TGGCCTCGTGCG
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTNCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTEST: gi|88373395|gb|CI614731.1|CI614731
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGT
EST: CTTCTCCCGTCGCCATGTCCGCCGTGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88337603|gb|CI630900.1|CI630900
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCEST: gi|88416059|gb|CI594171.1|CI594171
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88337429|gb|CI630726.1|CI630726
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGGGGAGTTTATACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88719499|gb|CI743009.1|CI743009
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGNGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88728091|gb|CI751601.1|CI751601
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88345182|gb|CI628436.1|CI628436
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTNCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTEST: gi|88345084|gb|CI628338.1|CI628338
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGT
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTATACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88337595|gb|CI630892.1|CI630892
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTATACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88722411|gb|CI745921.1|CI745921
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88394949|gb|CI607676.1|CI607676
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCAGTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88337269|gb|CI629559.1|CI629559
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTATACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88385233|gb|CI630334.1|CI630334
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTATACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88345200|gb|CI628454.1|CI628454
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTATACCAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGEST: gi|88386959|gb|CI629286.1|CI629286
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACAC-AATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCG
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTATACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88371619|gb|CI602797.1|CI602797
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGGGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|29636053|gb|CB641062.1|CB641062
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCGCCGCCAACGATCTCCGATCGAGACAAACCCTAGCCACGCCCATTGCCTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctctctccctctctctctctttctctctctgcctcctctctctgtggctgcctgcgcatccgtctcccatcccaacgtgtcggaaaagccatcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC