1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGGGAAGCTGCTGGGCCACGGCCAGTTCGGCTACACCTTCGCCGCCGTCGACCGCCGCTCCAGCGAGCGCGTCGCCGTCAAGCGCATCGACAAGAACAAGgtatgggcccaaacgagcgtggtggtgtgcggctgacgcgtgggggccatgtgcccatgtgttgctcgattcgatcggccagttgggctagcctggacga...
species | Oryza sativa |
transcript | LOC_Os07g22710.4 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCGCCGCTCCAGCGAGCGCGTCGCCGTCAAGCGCATCGACAAGAACAAG ATGGTTCTTCCTGTTGCCGTTGAAGACGTAAAGCGAGAAGTTAAAATACTGEST: gi|88453478|gb|CI563357.1|CI563357
genomic: ACCGCCGCTCCAGCGAGCGCGTCGCCGTCAAGCGCATCGACAAGAACAAGgtatgggccc ... ttcgttgcagATGGTTCTTCCTGTTGCCGTTGAAGACGTAAAGCGAGAAGTTAAAATACTG
EST: ACCGCCGCTCCAGCGAGCGCGTCGCCGTCAAGCGCATCGACAAGAACAAG ATGGTTCTTCCTGTTGCCGTTGAAGACGTAAAGCGAGAAGTTAAAATACTGEST: gi|29627331|gb|CB632342.1|CB632342
genomic: ACCGCCGCTCCAGCGAGCGCGTCGCCGTCAAGCGCATCGACAAGAACAAGgtatgggccc ... ttcgttgcagATGGTTCTTCCTGTTGCCGTTGAAGACGTAAAGCGAGAAGTTAAAATACTG
EST: ACCGCCGCTCCAGCGAGCGCGTCGCCGTCAAGCGCATCGACAAGAACAAG ATGGTTCTTCCTGTTGCCGTCGAAGACGTAAAGCGAGAAGTTAAAATACTG
genomic: ACCGCCGCTCCAGCGAGCGCGTCGCCGTCAAGCGCATCGACAAGAACAAGgtatgggccc ... ttcgttgcagATGGTTCTTCCTGTTGCCGTTGAAGACGTAAAGCGAGAAGTTAAAATACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGGAAGCTGCTGGGCCACGGCCAGTTCGGCTACACCTTCGCCGCCGTCGACCGCCGCTCCAGCGAGCGCGTCGCCGTCAAGCGCATCGACAAGAACAAGgtatgggcccaaacgagcgtggtggtgtgcggctgacgcgtgggggccatgtgcccatgtgttgctcgattcgatcggccagttgggctagcctggacga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC