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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCACACGTACTCCAGCGAGGACGCCCTGCCGGAGGGGCCCGAGTCCGACCTCTTCGTCTACTACTGCAAGCACTGCGCCTCCCACGTCCTCATCACCGgtcagcttctttccccctccctcctgttcgtttccccttttggggaattccccttcttgttcgcccaagagctcaggttgctaaattttaccagatccgt...

Basic information

species Oryza sativa
transcript LOC_Os07g19470.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g19470.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G099547_T04 (Zea mays), 5'ss of exon 1
ACGCACACGTACTCCAGCGAGGACGCCCTGCCGGAGGGGCCCGAGTCCGACCTCTTCGTCTACTACTGCAAGCACTGCGCCTCCCACGTCCTCATCACCGgtcagcttctttccccctccctcctgttcgtttccccttttggggaattccccttcttgttcgcccaagagctcaggttgctaaattttaccagatccgt-----
|| ||||| ||||| ||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||  || || || | |  ||  ||| | |   |  || | ||  ||     ||       ||| |  |||   ||||||  | | ||    |     
ACACACACCTACTCGAGCGAGGACGCACTGCCGGAGGGCCCCGAGTCCGACCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct--cctcccccattcgcttaattttctcagatctggtagtctgctaggaattaa---gggaggttgggtccttaaattcaagcggaagattcagct

upper sequence: LOC_Os07g19470.1 (Oryza sativa), 5'ss of exon 1
lower sequence: AT5G63440.3 (Arabidopsis thaliana), 5'ss of exon 1
ACGCACACGTACTCCAGCGAGGACGCCCTGCCGGAGGGGCCCGAGTCCGACCTCTTCGTCTACTACTGCAAGCACTGCGCCTCCCACGTCCTCATCACCGgtcagcttctttccccctccctcctgttcgtttccccttttggggaattccccttcttgttcgcccaagagc--tcaggttgctaaatt-ttaccagatccgt
|| ||||||||||| ||||||||||||  |||||| || ||||| || || |||||||| ||||||||||| ||||| |  || || ||||| ||||| |||  | ||||   ||  |  | ||| ||  || |   ||| |||        | |    || |    | | |  |    |||| | |||  |    | |    
ACACACACGTACTCGAGCGAGGACGCCGCGCCGGATGGACCCGACTCTGATCTCTTCGTATACTACTGCAAACACTGTGGTTCTCATGTCCTTATCACTGgttcgtttct---ccaatttcaccttttgattccgagtttggggtttagttgcgttaaattagagtgaaacccttttacttgcgagattgctctttggtttcc

upper sequence: LOC_Os07g19470.1 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv17s0000g01530.t01 (Vitis vinifera), 5'ss of exon 1
ACGCACACGTACTCCAGCGAGGACGCCCTGCCGGAGGGGCCCGAGTCCGACCTCTTCGTCTACTACTGCAAGCACTGCGCCTCCCACGTCCTCATCACCGgtcagcttctttccccctccctcctgttcgtttccccttttggggaattccccttcttgttcgcccaagagctcaggttgctaaattttaccagatccgt-
|||||||| ||||| ||||| ||||||   || || || || |||||||| |||||||||||||| ||||||||||| |  || || ||||||||||| |||  | |   |  |  |    |  ||||   |     | ||  |   ||      ||     | |    || | |   || | | | | | | |       
ACGCACACCTACTCGAGCGAAGACGCCGCCCCAGATGGCCCTGAGTCCGATCTCTTCGTCTACTATTGCAAGCACTGTGGATCTCATGTCCTCATCACTGgttggttctctctctaccattttttgttttctgtttgtgtttagcggtttatgaactacgatggctgt-agttaattctgttgactgtgaactgggtttcg

upper sequence: LOC_Os07g19470.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ33913 (Selaginella moellendorffii), 5'ss of exon 1
ACGCACACGTACTCCAGCGAGGACGCCCTGCCGGAGGGGCCCGAGTCCGACCTCTTCGTCTACTACTGCAAGCACTGCGCCTCCCACGTCCTCATCACCGgtcagcttctttccccct--ccctcctgttcgtttccccttttggggaattccccttcttgttcgcccaagagctcaggttgctaaattttaccagatccgt
|||||||||||||| ||||| |||||    || || || ||||| |||||||||| |||||||||||||||||| |||| ||| ||||| |||||||| ||| | ||     |  | |  | |||  |    | | | ||      |  || | |     |||||  ||    |     |||||  || ||  |     || 
ACGCACACGTACTCTAGCGAAGACGCTGCTCCCGATGGCCCCGACTCCGACCTCTACGTCTACTACTGCAAGCATTGCGGCTCTCACGTACTCATCACAGgtaatctcgccgcggcattacgctctagagattgttcgctagctatggctttcgcgatacgttcg--cattgcccgcatttgcttcatctttgcgctgtcga

upper sequence: LOC_Os07g19470.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ36938 (Selaginella moellendorffii), 5'ss of exon 1
ACGCACACGTACTCCAGCGAGGACGCCCTGCCGGAGGGGCCCGAGTCCGACCTCTTCGTCTACTACTGCAAGCACTGCGCCTCCCACGTCCTCATCACCGgtcagcttctttccccctccctc-ctgttcgtttccccttttggggaattccccttcttgttcgcccaagagctcaggttgctaaattttaccagatccgt-
|||||||||||||| ||||| |||||    || || || ||||| |||||||||| |||||||||||||||||| |||| ||| ||||| |||||||| ||| | ||     |  | |  | | ||     | |     ||| | ||      |   |||  ||  ||   |||  |  |      | |     |||| || 
ACGCACACGTACTCTAGCGAAGACGCTGCTCCCGATGGCCCCGACTCCGACCTCTACGTCTACTACTGCAAGCATTGCGGCTCTCACGTACTCATCACAGgtaatctcgccgcggcattacgctctagagatctatggctttcgcgatacgttcgcattgcccg--catttgcttcgtctttgcgctgtcgatcgatcagtc