1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGGCGGCACGGCCGTGTACGCCGCCGTCAACAGCCTCTACAACGTCGAGGGTGGCCACCGCGCCATCGTCTTCAACCGCATCCAGGGAATCAAGGACAAGgtaaccggacacgcccatccccccgccccttccctgttccatttcgttacttggatgtgccgcgtggtttggttgcggcgttaacgattcggtcgtttag...
species | Oryza sativa |
transcript | LOC_Os07g15880.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTGGCCACCGCGCCATCGTCTTCAACCGCATCCAGGGAATCAAGGACAAG GTATACCCTGAGGGGACTCACTTTATGATTCCATGGTTTGAGAGGCCAATCEST: gi|218496989|gb|FG950832.1|FG950832
genomic: GTGGCCACCGCGCCATCGTCTTCAACCGCATCCAGGGAATCAAGGACAAGgtaaccggac ... ctacctacagGTATACCCTGAGGGGACTCACTTTATGATTCCATGGTTTGAGAGGCCAATC
EST: GTGGCCACCGCGCCATCGTCTTCAACCGCATCCAGGGAATCAAGGACAAG GTATACCCTGAGGGGACTCACTTTATGATTCCATGGTTTGAGAGGCCAATCEST: gi|27578030|gb|CB000725.1|CB000725
genomic: GTGGCCACCGCGCCATCGTCTTCAACCGCATCCAGGGAATCAAGGACAAGgtaaccggac ... ctacctacagGTATACCCTGAGGGGACTCACTTTATGATTCCATGGTTTGAGAGGCCAATC
EST: GTGGCCACCGCGCCATCGTCTTCAACCGCATCCAGGGAATCAAGGACAAG GTATACCCTGAGGGGACTCACTTTATGATTCCATGGTTTGAGAGGCCAATCEST: gi|117233393|gb|CT848123.1|CT848123
genomic: GTGGCCACCGCGCCATCGTCTTCAACCGCATCCAGGGAATCAAGGACAAGgtaaccggac ... ctacctacagGTATACCCTGAGGGGACTCACTTTATGATTCCATGGTTTGAGAGGCCAATC
EST: GTGGCCACCGCGCCATCGTCTTCAACCGCATCCAGGGAATCAAGGACAAG GTATACCCTGAGGGGACTCACTTTATGATTCCATGGTTTGAGAGGCCAATCEST: gi|58686687|gb|CK075374.1|CK075374
genomic: GTGGCCACCGCGCCATCGTCTTCAACCGCATCCAGGGAATCAAGGACAAGgtaaccggac ... ctacctacagGTATACCCTGAGGGGACTCACTTTATGATTCCATGGTTTGAGAGGCCAATC
EST: GTGGCCACCGCGCCATCGTCTTCAACCGCATCCAGGGAATCAAGGACAAG GTATACCCTGAGGGGACTCACTTTATGATTCCATGGTTTGAGAGGCCAATCEST: gi|11118160|gb|AU163348.1|AU163348
genomic: GTGGCCACCGCGCCATCGTCTTCAACCGCATCCAGGGAATCAAGGACAAGgtaaccggac ... ctacctacagGTATACCCTGAGGGGACTCACTTTATGATTCCATGGTTTGAGAGGCCAATC
EST: GTGGCCACCGCGCCATCGTCTTCAACCGCATCCAGGGAATCAAGGACAAG GTATACCCTGAGGGGACTCACTTTATGATTCCATGGTTTGAGAGGCCAATC
genomic: GTGGCCACCGCGCCATCGTCTTCAACCGCATCCAGGGAATCAAGGACAAGgtaaccggac ... ctacctacagGTATACCCTGAGGGGACTCACTTTATGATTCCATGGTTTGAGAGGCCAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGGCACGGCCGTGTACGCCGCCGTCAACAGCCTCTACAACGTCGAGGGTGGCCACCGCGCCATCGTCTTCAACCGCATCCAGGGAATCAAGGACAAGgtaaccggacacgcccatccccccgccccttccctgttccatttcgttacttggatgtgccgcgtggtttggttgcggcgttaacgattcggtcgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcggcg