1 5' 3' | 2 5' 3' | 3 5' 3' |
GCTAAGCTAGAGCACGAGGGTCAGGCAACGCGTTTCTCTCTCGCTGAAAAGTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctctgtctcccttctcttctcttcatctgttcatggtgagtttgattggtggtgtggtgtggtgtgggactctgaggctgtgattgattcgatt...
species | Oryza sativa |
transcript | LOC_Os07g14150.4 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|33684397|gb|CF312636.1|CF312636
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|88376916|gb|CI639241.1|CI639241
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|33684446|gb|CF312685.1|CF312685
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|33670472|gb|CF298711.1|CF298711
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCTTTTTCTGGTCEST: gi|88348203|gb|CI637664.1|CI637664
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|33681048|gb|CF309287.1|CF309287
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|33681325|gb|CF309564.1|CF309564
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|33680862|gb|CF309101.1|CF309101
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|55413799|gb|CV726175.1|CV726175
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|88576116|gb|CI670261.1|CI670261
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|88324909|gb|CI644920.1|CI644920
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|33682363|gb|CF310602.1|CF310602
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGGGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|88328922|gb|CI647002.1|CI647002
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|33670643|gb|CF298882.1|CF298882
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCANTTGCTGGTCEST: gi|33820665|gb|CF336142.1|CF336142
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTACGCCATGGATGAGGCCCAGC TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|33679899|gb|CF308138.1|CF308138
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|88575933|gb|CI670078.1|CI670078
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|33683865|gb|CF312104.1|CF312104
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|88351621|gb|CI628841.1|CI628841
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAG- TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|88327608|gb|CI646801.1|CI646801
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|33654855|gb|CF277469.1|CF277469
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGGTGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|58592974|gb|CF991282.1|CF991282
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: TTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGTGAGGCCCACGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTEST: gi|88334769|gb|CI647151.1|CI647151
genomic: TTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAG-GAGGCCCA-GTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGT
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|33680734|gb|CF308973.1|CF308973
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGT TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTCEST: gi|88337228|gb|CI628314.1|CI628314
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
EST: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGNCATGGAGGAGGCCCAG- TTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
genomic: GTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctct ... tttcctgtagTTGTGGAGTCAAAGGATGGAACCATCTCAGTTGCTTCTGCATTTGCTGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAAGCTAGAGCACGAGGGTCAGGCAACGCGTTTCTCTCTCGCTGAAAAGTTTGCTGGATTTGCTCCTCTCCCTCTCTCCGCCATGGAGGAGGCCCAGTgtacgtctctgtctcccttctcttctcttcatctgttcatggtgagtttgattggtggtgtggtgtggtgtgggactctgaggctgtgattgattcgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG