1 5' 3' | 2 5' 3' | 3 5' 3' |
TTCCTGCATAGTTTCAGAGCTAGAGCTAGTGTTGCTCTTTACAGCTTTGGGCGGATTCGCGATGGCGGATGAAGAGTCGTCTGACTTCACCTTTTGCAAGgttttatttataacttgcctccctattgcttctatgttcagctacttgttatttctacaatcaatcagtcatatttttttttgacttatgtattactttc...
species | Oryza sativa |
transcript | LOC_Os07g12830.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGGAT-CGCGATGGCGGATGAAGAGTCGTCTGACTTCACCTTTTGCAAG ATCGATTTTGAGGGAGATGGTGGTCTGGAGTTCC-TAAAGCTAEST: gi|58602896|gb|CK013424.1|CK013424
genomic: GCGGATTCGCGATGGCGGATGAAGAGTCGTCTGACTTCACCTTTTGCAAGgttttattta ... tgttttctagATCGATTTTGAGGGAGATGGTGGTCTGGAGTTCCCTAAAGCTA
EST: GCGGATTCGCGATGGCGGATGAAGAGTCGTCTGACTTCACCTTTTGCAAG ATCGATTTTGAGGGAGATGGTGGTCTGGAGTTCCCTAAAGCTATCCCTGTGEST: gi|117243543|gb|CT843116.1|CT843116
genomic: GCGGATTCGCGATGGCGGATGAAGAGTCGTCTGACTTCACCTTTTGCAAGgttttattta ... tgttttctagATCGATTTTGAGGGAGATGGTGGTCTGGAGTTCCCTAAAGCTATCCCTGTG
EST: GCGGATTCGCGATGGCGGATGAAGAGTCGTCTGACTTCACCTTTTGCAAG ATCGATTTTGAGGGAGATGGTGGTCTGGAGTTCCCTAAAGCTATCCCTGTGEST: gi|58693203|gb|CK081890.1|CK081890
genomic: GCGGATTCGCGATGGCGGATGAAGAGTCGTCTGACTTCACCTTTTGCAAGgttttattta ... tgttttctagATCGATTTTGAGGGAGATGGTGGTCTGGAGTTCCCTAAAGCTATCCCTGTG
EST: GCGGATTCGCGATGGCGGATGAAGAGTCGTCTGACTTCACCTTTTGCAAG ATCGATTTTGAGGGAGATGGTGGTCTGGAGTTCCCTAAAGCTATCCCTGTG
genomic: GCGGATTCGCGATGGCGGATGAAGAGTCGTCTGACTTCACCTTTTGCAAGgttttattta ... tgttttctagATCGATTTTGAGGGAGATGGTGGTCTGGAGTTCCCTAAAGCTATCCCTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCTGCATAGTTTCAGAGCTAGAGCTAGTGTTGCTCTTTACAGCTTTGGGCGGATTCGCGATGGCGGATGAAGAGTCGTCTGACTTCACCTTTTGCAAGgttttatttataacttgcctccctattgcttctatgttcagctacttgttatttctacaatcaatcagtcatatttttttttgacttatgtattactttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcctccc