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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCTCTCGCCGTCGCCGTCGCGTCCCATGGCGAAGTCGCGGCCGCCCAAGCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctccccctcccacctccccaaccgctgctcccttcgatccggaatttctgggggtttttttgggggggattttttttgtgggggcgtgggtttc...

Basic information

species Oryza sativa
transcript LOC_Os07g08880.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g08880.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G097726_T03 (Zea mays), 5'ss of exon 1
CCCCTCTCGCCGTCGCCGTCGCGTCCCATGGCG---AAGTCGCGGCCGCCCAAGCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctccccctcccacctccccaaccgctgctcccttcgatccggaatttctgggggtttttttggggg-------ggattttttttgtgggggcgtgggtttc
   |  |||||||||| |||||| |||||||||   |||||||| |||||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||||||   |||| | || ||  |  | |||    |  |   |  ||    ||| |||||| |||||||  ||       || |    | | ||||| | || ||   
---CCTTCGCCGTCGCGGTCGCGCCCCATGGCGGGGAAGTCGCGACCGCCCAAGCGGATCCTCGAGTCCTATACCATCAAGGGTTCGGACAGAGTCATCAAGCgtgag-tgcccctttcccccgtctgatccggaatttacggagggcct---tttttgggggattttttgttggcgttggcgggtggcgtatctggggacatgtgt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88324893|gb|CI644902.1|CI644902
EST:     GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC                         CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: gi|88736691|gb|CI760199.1|CI760199
EST:     GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC                         CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: gi|55434340|gb|CV730291.1|CV730291
EST:     GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC                         CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: gi|58603106|gb|CK013634.1|CK013634
EST:     GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC                         CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: gi|33822155|gb|CF336893.1|CF336893
EST:     GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC                         CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: gi|55432497|gb|CV729270.1|CV729270
EST:     GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC                         CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: gi|325493451|gb|JG457975.1|JG457975
EST:     GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC                         CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: gi|88328018|gb|CI648425.1|CI648425
EST:     GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC                         CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: gi|88407773|gb|CI607907.1|CI607907
EST:     GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC                         CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: gi|88743386|gb|CI766894.1|CI766894
EST:     GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC                         CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: gi|88392298|gb|CI612772.1|CI612772
EST:     GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC                         CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: gi|88392287|gb|CI612761.1|CI612761
EST:     GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC                         CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: gi|88392479|gb|CI611745.1|CI611745
EST:     GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC                         CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: gi|86910171|gb|CI292979.1|CI292979
EST:     GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC                         CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: gi|58679044|gb|CK067731.1|CK067731
EST:     GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC                         CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
EST: gi|88760851|gb|CI770407.1|CI770407
EST:     GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGC                         CTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG
genomic: GCGGATCCTCGAGTCCTACACCATCAAGGGCTCCGACAAAGTCATCAAGCgtgaggctcc ... tttcttgcagCTGGGGACTGTGTGCTAATGAGGGCATCTGATACATCAAAGCCACCCTATG