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GTGGTGAGAGCGAGAGGAGAGGAGGCCAATCGTCGAGGAGGAGGAGGAGGAGGAGGAGATGGATACTCCTGACCGTGCTGCGGCGGCGGCGCGGGCGGAGgtgagtgcgacaactgaatcttgttactgttaagtgtagtagtatgtcaagggtattagagtactttcccctagccaccaaatccggtcattgcaggcgc...
species | Oryza sativa |
transcript | LOC_Os07g07974.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGATACTCCTGACCGTGCTGCGGCGGCGGCGCGGGCGGAG GACTCCCCACTTTTCAGCTTCATCGATAGCCTGTCTCCGATCGAGCCTCTCEST: gi|33677327|gb|CF305566.1|CF305566
genomic: GGATACTCCTGACCGTGCTGCGGCGGCGGCGCGGGCGGAGgtgagtgcga ... ctgagtgcagGACTCCCCACTTTTCAGCTTCATCGATAGCCTGTCTCCGATCGAGCCTCTC
EST: GGATACTCCTGACCGTGCTGCGGCGGCGGCGCGGGCGGAG GACTCCCCACTTTTCAGCTTCATCGATAGCCTGTCTCCGATCGAGCCTCTCEST: gi|58658088|gb|CK046768.1|CK046768
genomic: GGATACTCCTGACCGTGCTGCGGCGGCGGCGCGGGCGGAGgtgagtgcga ... ctgagtgcagGACTCCCCACTTTTCAGCTTCATCGATAGCCTGTCTCCGATCGAGCCTCTC
EST: ATGGATACTCCTGACCGTGCTGCGGCGGCGGCGCGGGCGGAG TEST: gi|58658088|gb|CK046768.1|CK046768
genomic: ATGGATACTCCTGACCGTGCTGCGGCGGCGGCGCGGGCGGAGgtgagtgcga ... ctgagtgcag-
EST: ATGGATACTCCTGACCGTGCTGCGGCGGCGGCGCGGGCGGAG TEST: gi|33677415|gb|CF305654.1|CF305654
genomic: ATGGATACTCCTGACCGTGCTGCGGCGGCGGCGCGGGCGGAGgtgagtgcga ... ctgagtgcag-
EST: GGCGGCGCGGGCGGAG GACTCCCCACTTTTCAGCTTCATCGATAGCCTGTCTCCGATCGAGCCTCTCEST: gi|88301191|gb|CI594717.1|CI594717
genomic: GGCGGCGCGGGCGGAGgtgagtgcga ... ctgagtgcagGACTCCCCACTTTTCAGCTTCATCGATAGCCTGTCTCCGATCGAGCCTCTC
EST: ATGGATACTCCTGACCGTGCTGCGGCGGCGGCGCGGGCGGAG GACTCCCCACTTTTCAGCTTCATCGATAGCCTGTCTCCGATCGAGCCTCTCEST: gi|58692151|gb|CK080838.1|CK080838
genomic: ATGGATACTCCTGACCGTGCTGCGGCGGCGGCGCGGGCGGAGgtgagtgcga ... ctgagtgcagGACTCCCCACTTTTCAGCTTCATCGATAGCCTGTCTCCGATCGAGCCTCTC
EST: ATGGATACTCCTGACCGTGCTGCGGCGGCGGCGCGGGCGGAG GACTCCCCACTTTTCAGCTTCATCGATAGCCTGTCTCCGATCGAGCCTCTCEST: gi|33679115|gb|CF307354.1|CF307354
genomic: ATGGATACTCCTGACCGTGCTGCGGCGGCGGCGCGGGCGGAGgtgagtgcga ... ctgagtgcagGACTCCCCACTTTTCAGCTTCATCGATAGCCTGTCTCCGATCGAGCCTCTC
EST: GGATACTCCTGACCGTGCTGCGGCGGCGGCGCGGGCGGAG GACTCCCCACTTTTCAGCTTCATCGATAGCCTGTCTCCGATCGAGCCTCTCEST: gi|29686776|gb|CB683051.1|CB683051
genomic: GGATACTCCTGACCGTGCTGCGGCGGCGGCGCGGGCGGAGgtgagtgcga ... ctgagtgcagGACTCCCCACTTTTCAGCTTCATCGATAGCCTGTCTCCGATCGAGCCTCTC
EST: AGGACGATATGGATACTCCTGACCGTGCTGCGGCGGCGGCGCGGGCGGAG GACTCCCCACTTTTCAGCTTCATCGATAGCCTGTCTCCGATCGAGCCTCTC
genomic: AGGAGGAGATGGATACTCCTGACCGTGCTGCGGCGGCGGCGCGGGCGGAGgtgagtgcga ... ctgagtgcagGACTCCCCACTTTTCAGCTTCATCGATAGCCTGTCTCCGATCGAGCCTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTGAGAGCGAGAGGAGAGGAGGCCAATCGTCGAGGAGGAGGAGGAGGAGGAGGAGATGGATACTCCTGACCGTGCTGCGGCGGCGGCGCGGGCGGAGgtgagtgcgacaactgaatcttgttactgttaagtgtagtagtatgtcaagggtattagagtactttcccctagccaccaaatccggtcattgcaggcgc
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaggcg