1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGACGACGTCCCCGAGGACATGGTCAAGCGCCGCGCCGAGGTCGTCTCCAGGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAGgtcaggcccaaacttacccccacgcccccctcgatctagctgcagggcttgcggcttactagatctgttcatcgtctagttggtgttagctgtatgtagg...
species | Oryza sativa |
transcript | LOC_Os07g07250.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAG ATTGGTCCTGATCAGATTGAGEST: gi|88369514|gb|CI582709.1|CI582709
genomic: GGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAGgtcaggccca ... aacattgcagATTGGTCCTGATCAGATTGAG
EST: GGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAG ATTGGTCCTGATCAGATTGAGACTCTGTATCAGTATGCCAAATTTCAGTTTEST: gi|88373406|gb|CI614742.1|CI614742
genomic: GGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAGgtcaggccca ... aacattgcagATTGGTCCTGATCAGATTGAGACTCTGTATCAGTATGCCAAATTTCAGTTT
EST: TGCTCACCTCGCTCGGAGAGGCCATAGACAACATCCACCAGAACCAGGAG ATTGGTCCTGATEST: gi|33682160|gb|CF310399.1|CF310399
genomic: -GCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAGgtcaggccca ... aacattgcagATTGGTCCTGAT
EST: GGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAG ATTGGTCCTGATCAGATTGAGACTCTGTATCAGTATGCCAAATTTCAGTTTEST: gi|29616632|gb|CB621644.1|CB621644
genomic: GGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAGgtcaggccca ... aacattgcagATTGGTCCTGATCAGATTGAGACTCTGTATCAGTATGCCAAATTTCAGTTT
EST: GGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAG ATTGGTCCTGATCAGATTGAGACTCTGTATCAGTGTGCCAAATTTCAGTTTEST: gi|88431185|gb|CI574356.1|CI574356
genomic: GGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAGgtcaggccca ... aacattgcagATTGGTCCTGATCAGATTGAGACTCTGTATCAGTATGCCAAATTTCAGTTT
EST: GGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAG ATTGGTCCTGATCAGATTGAEST: gi|88432308|gb|CI565341.1|CI565341
genomic: GGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAGgtcaggccca ... aacattgcagATTGGTCCTGATCAGATTGA
EST: GGCTCACCTCGCTCGGCGAGGCCATCGGCAACATCCACCAGAAC-AGGAG ATTGGTCCTGATCAGATTGAGACTCTGTATCAGTATGCCAAATTTCAGTTTEST: gi|88417364|gb|CI579025.1|CI579025
genomic: GGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAGgtcaggccca ... aacattgcagATTGGTCCTGATCAGATTGAGACTCTGTATCAGTATGCCAAATTTCAGTTT
EST: GGCTCACCTCGCTCGGCGAGGC-ATCGACAACATCCACCAGAACCAGCAG ATTGGTCCTGATEST: gi|88423051|gb|CI613352.1|CI613352
genomic: GGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAGgtcaggccca ... aacattgcagATTGGTCCTGAT
EST: GGCTCACCTCGCTCGGCGAGGC-ATAGACAACATCCACCAGAACCAGCAG ATTGGTCCTGATCAGATTGAGACTCTGTATCAGTAEST: gi|88407742|gb|CI607876.1|CI607876
genomic: GGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAGgtcaggccca ... aacattgcagATTGGTCCTGATCAGATTGAGACTCTGTATCAGTA
EST: GGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAG ATTGGTCCTGATCAGATTGAGACTCTGTATCAGTATGCCAAATTTCAGTTTEST: gi|88373282|gb|CI614618.1|CI614618
genomic: GGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAGgtcaggccca ... aacattgcagATTGGTCCTGATCAGATTGAGACTCTGTATCAGTATGCCAAATTTCAGTTT
EST: GGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAG ATTGGTCCTGATCAGATTGAGATTCTGTATCAGTATGCCAAATTTCAGTTTEST: gi|29660022|gb|CB656297.1|CB656297
genomic: GGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAGgtcaggccca ... aacattgcagATTGGTCCTGATCAGATTGAGACTCTGTATCAGTATGCCAAATTTCAGTTT
EST: GGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAG ATTGGTCCTGATCAGATTGAGACTCTGTATCAGTATGCCAAATTTCAGTTT
genomic: GGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAGgtcaggccca ... aacattgcagATTGGTCCTGATCAGATTGAGACTCTGTATCAGTATGCCAAATTTCAGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACGACGTCCCCGAGGACATGGTCAAGCGCCGCGCCGAGGTCGTCTCCAGGCTCACCTCGCTCGGCGAGGCCATCGACAACATCCACCAGAACCAGCAGgtcaggcccaaacttacccccacgcccccctcgatctagctgcagggcttgcggcttactagatctgttcatcgtctagttggtgttagctgtatgtagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccctc