1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTCGAGTTTCGTCTCCTCGCCGCCGCTTGCGCCGATCCCCATCCTGCGAGGAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatccctccctacccacacctcatcagctattctgcgttatccctcaaaaaagtttcggggttcaaccgaaacagggttagatctgcctctgccc...
species | Oryza sativa |
transcript | LOC_Os07g07194.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CTTCAGAGGATTATAGTGTCTGCTTCATTCGGAGGTTCATCGTCGCCAAAAEST: gi|58606379|gb|CK034412.1|CK034412
genomic: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... acgattccagCTTCAGAGGATTATAGTGTCTGCTTCATTCGGAGGTTCATCGTCGCCAAAA
EST: GAGAGGTGGCGCCCGGCGTACTCCTGCTTCCACCGAATCGTCGCTCGCCG CTTCAGAGGATTATAGTGTCTGCTTCATACGGAGGTTCATCGTCGCCAAAAEST: gi|117247792|gb|CT848592.1|CT848592
genomic: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... acgattccagCTTCAGAGGATTATAGTGTCTGCTTCATTCGGAGGTTCATCGTCGCCAAAA
EST: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CTTCAGAGGATTATAGTGTCTGCTTCATTCGGAGGTTCATCGTCGCCAAAAEST: gi|88729716|gb|CI753226.1|CI753226
genomic: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... acgattccagCTTCAGAGGATTATAGTGTCTGCTTCATTCGGAGGTTCATCGTCGCCAAAA
EST: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CTTCAGAGGATTATAGTGTCTGCTTCATTCGGAGGTTCATCGTCGCCAAAAEST: gi|88726064|gb|CI749719.1|CI749719
genomic: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... acgattccagCTTCAGAGGATTATAGTGTCTGCTTCATTCGGAGGTTCATCGTCGCCAAAA
EST: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CTTCAGAGGATTATAGTGTCTGCTTEST: gi|88353014|gb|CI630192.1|CI630192
genomic: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... acgattccagCTTCAGAGGATTATAGTGTCTGCTT
EST: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CTTCAGAGGATTATAGTGTCTGCTTCATTCGGAGGTTCATCGTCGCCAAAAEST: gi|88415353|gb|CI586559.1|CI586559
genomic: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... acgattccagCTTCAGAGGATTATAGTGTCTGCTTCATTCGGAGGTTCATCGTCGCCAAAA
EST: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CTTCAGAGGATTATAGTGTCTGCTTCATTCGGAGGTTCATCGTCGCCAAAAEST: gi|88717225|gb|CI740735.1|CI740735
genomic: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... acgattccagCTTCAGAGGATTATAGTGTCTGCTTCATTCGGAGGTTCATCGTCGCCAAAA
EST: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CTTCAGAGGATTATAGTGTCTGCTTCATTCGGAGGTTCATCGTCGCCAAAAEST: gi|88402597|gb|CI598824.1|CI598824
genomic: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... acgattccagCTTCAGAGGATTATAGTGTCTGCTTCATTCGGAGGTTCATCGTCGCCAAAA
EST: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CTTCAGAGGATTATAGTGTCTGCTTCATTCGGAGGTTCATCGTCGCCAAAAEST: gi|88337318|gb|CI629608.1|CI629608
genomic: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... acgattccagCTTCAGAGGATTATAGTGTCTGCTTCATTCGGAGGTTCATCGTCGCCAAAA
EST: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCG CTTCAGAGGATTATAGTGTCTGCTTCATTCGGAGGTTCATCGTCGCCAAAAEST: gi|88337718|gb|CI632220.1|CI632220
genomic: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... acgattccagCTTCAGAGGATTATAGTGTCTGCTTCATTCGGAGGTTCATCGTCGCCAAAA
EST: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGNATCGTCGCTCGCCG CTTCAGAGGATTATAGTGTCTGCTTCATTCGGAGGTTCATCGTCGCCAAAA
genomic: GAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatcc ... acgattccagCTTCAGAGGATTATAGTGTCTGCTTCATTCGGAGGTTCATCGTCGCCAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGAGTTTCGTCTCCTCGCCGCCGCTTGCGCCGATCCCCATCCTGCGAGGAGAGGTGGCGCCCGGCGTCCTCCTGCTTCCACCGCATCGTCGCTCGCCGgtgagcatccctccctacccacacctcatcagctattctgcgttatccctcaaaaaagtttcggggttcaaccgaaacagggttagatctgcctctgccc
- - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG