Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCTCACCCTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcgccgccgttgctcttcttgttcctccgcgtcagtgcgccggcggtcgctaatcgtgctgagaacgcttgttttccttgttgcag

Basic information

species Oryza sativa
transcript LOC_Os07g05580.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88327950|gb|CI648352.1|CI648352
EST:     CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|163927962|gb|EG714270.1|EG714270
EST:     CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|88366407|gb|CI610702.1|CI610702
EST:     CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|163926277|gb|EG711853.1|EG711853
EST:     CTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|88580769|gb|CI697720.1|CI697720
EST:     CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|88349278|gb|CI678255.1|CI678255
EST:     TCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: TCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|33684771|gb|CF313010.1|CF313010
EST:     CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|88586490|gb|CI704191.1|CI704191
EST:     CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|33688323|gb|CF316562.1|CF316562
EST:     CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|8527973|gb|AU092788.1|AU092788
EST:     CCGCT-TTCGCCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CCGCTCTTCG-CCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|88467092|gb|CI696451.1|CI696451
EST:     CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|325493941|gb|JG458465.1|JG458465
EST:     CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTC
genomic: CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTC
EST: gi|88692496|gb|CI736071.1|CI736071
EST:     TCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCANAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: TCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|88354665|gb|CI629097.1|CI629097
EST:     TCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: TCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|33689052|gb|CF317291.1|CF317291
EST:     CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|11025648|gb|AU162249.1|AU162249
EST:     GCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: GCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|8324531|gb|AU091678.1|AU091678
EST:     AACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: AACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|8527976|gb|AU092791.1|AU092791
EST:     TCTTCGCCACAAG                         ATCGTTTCGTCCCAGTCGGTGTTTCCGGTCTTTTGAGCCCGGAGATGGC
genomic: TCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTG-TTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|58686766|gb|CK075453.1|CK075453
EST:     CCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|58590733|gb|CF989041.1|CF989041
EST:     GCGAAAA-CCTAA-CCCGCCG-CGCCG-CGCTCTTCGCCACAAG                         ATCGTTTCGTCGGAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: GCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|286862|gb|D15669.1|D15669
EST:     AAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: AAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|8528009|gb|AU092824.1|AU092824
EST:     TAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: TAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|86887814|gb|CI297925.1|CI297925
EST:     CTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|218485100|gb|FG946937.1|FG946937
EST:     TCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: TCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|88694486|gb|CI738524.1|CI738524
EST:     TCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: TCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|88692391|gb|CI735966.1|CI735966
EST:     CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|88691248|gb|CI733832.1|CI733832
EST:     GCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: GCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|58689955|gb|CK078642.1|CK078642
EST:     GCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: GCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|11442873|gb|BF430772.1|BF430772
EST:     TCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: TCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|33688161|gb|CF316400.1|CF316400
EST:     CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCC-CAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|25800831|gb|CA756792.1|CA756792
EST:     TCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: TCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|88442858|gb|CI694262.1|CI694262
EST:     CTCCTCGCGAAAACCCTAACCCCGCCGCCGNCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|33824839|gb|CF338229.1|CF338229
EST:     CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|4878947|gb|AU063246.1|AU063246
EST:     CGAAAACCCTAACCCCGCCGCCGNCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|58597428|gb|CK007956.1|CK007956
EST:     CTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|2311826|gb|C27981.1|C27981
EST:     CCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|33687599|gb|CF315838.1|CF315838
EST:     CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|33656039|gb|CF278653.1|CF278653
EST:     CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|88690736|gb|CI734815.1|CI734815
EST:     GCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: GCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|33691957|gb|CF320196.1|CF320196
EST:     CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|88332381|gb|CI656250.1|CI656250
EST:     TCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: TCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|4969241|gb|AU066145.1|AU066145
EST:     CGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|88587499|gb|CI705250.1|CI705250
EST:     CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|58590187|gb|CF988495.1|CF988495
EST:     TCTTCGCCACAAG                         ATCGTTGCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: TCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|88716858|gb|CI740368.1|CI740368
EST:     TCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: TCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|88574993|gb|CI666762.1|CI666762
EST:     TCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: TCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|14191523|gb|AU183734.1|AU183734
EST:     AACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: AACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|14191849|gb|AU184060.1|AU184060
EST:     CGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|86831420|gb|CI299478.1|CI299478
EST:     CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: CTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
EST: gi|58603498|gb|CK014026.1|CK014026
EST:     GCCGCTCTTCGCCACAAG                         ATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC
genomic: GCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 41 (upstream exon), 48 (downstream exon)
Score: 66

ACTCCTCACCCTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcg ... cttgttgcagATCGTTTCGTCGCAGTCGGTGTTCCGGTCTTTTGAGCGCGGAGATGGC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTCCTCACCCTCCTCGCGAAAACCCTAACCCCGCCGCCGCCGCCGCTCTTCGCCACAAGgtaggcggcgccgccgttgctcttcttgttcctccgcgtcagtgcgccggcggtcgctaatcgtgctgagaacgcttgttttccttgttgcag

- - - - - CTCCTC