1 5' 3' | 2 5' 3' | 3 5' 3' |
ACCGCCATGGGTGACTGCATCCGGAGGCTCGAGGAGGAGATGGGCAAGATCGAGGTCTTCCGCCGCGAGCTCCCCCTCTGCGTCCGCCTCCTCGCCGACGgtaataactattaaacaaaaaaaaaagcctctttcttttttgttttgttttgtggtggcgagttgttgatttgggcatggcttgcgtgcag
species | Oryza sativa |
transcript | LOC_Os07g02800.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGAGGTCTTCCGCCGCGAGCTCCCCCTCTGCGTCCGCCTCCTCGCCGACG TGATTGATGTGATGAAGGAGGAGGTGGAGAAGAAGGGTGGTGATCGTAAGGEST: gi|88405816|gb|CI609715.1|CI609715
genomic: CGAGGTCTTCCGCCGCGAGCTCCCCCTCTGCGTCCGCCTCCTCGCCGACGgtaataacta ... ttgcgtgcagTGATTGATGTGATGAAGGAGGAGGTGGAGAAGAAGGGTGGTGATCGTAAGG
EST: CGAGGTCTTCCGCCGCGAGCTCCCCCTCTGCGTCCGCCTCCTCGCCGACG TGATTGATGTGATGAAGGAGGAGGTGGAGAAGAAGGGTGGTGATCGTAAGGEST: gi|88351421|gb|CI627437.1|CI627437
genomic: CGAGGTCTTCCGCCGCGAGCTCCCCCTCTGCGTCCGCCTCCTCGCCGACGgtaataacta ... ttgcgtgcagTGATTGATGTGATGAAGGAGGAGGTGGAGAAGAAGGGTGGTGATCGTAAGG
EST: CGAGGTCTTCCGCCGCGAGCTCCCCCTCTGCGTCCGCCTCCTCCCCGACG TGATTGATGTGATGAAGGAGGAGGTGGAGAAGAAGGGTGGTGATCGTAAGGEST: gi|88314654|gb|CI606722.1|CI606722
genomic: CGAGGTCTTCCGCCGCGAGCTCCCCCTCTGCGTCCGCCTCCTCGCCGACGgtaataacta ... ttgcgtgcagTGATTGATGTGATGAAGGAGGAGGTGGAGAAGAAGGGTGGTGATCGTAAGG
EST: GAGGTCTTCCGCCGCGAGCCTCCCCCTCTGCGTCCGACTCCTCGCCGACG TGATTGATGTGATGAAGGAGGAGGTGGAGAAGAAGGGTGGTGATCGTAAGGEST: gi|428936|gb|D25092.1|D25092
genomic: GAGGTCTTCCGCCGCGAGC-TCCCCCTCTGCGTCCGCCTCCTCGCCGACGgtaataacta ... ttgcgtgcagTGATTGATGTGATGAAGGAGGAGGTGGAGAAGAAGGGTGGTGATCGTAAGG
EST: CGAGGTCTTCCGCCGCGAGCTCCCCCTCTGCGTCCGCCTCCTCGGCGACG TGATTGATGTGATGAAGGAGGAGGTNGAGAAGEST: gi|88444937|gb|CI696379.1|CI696379
genomic: CGAGGTCTTCCGCCGCGAGCTCCCCCTCTGCGTCCGCCTCCTCGCCGACGgtaataacta ... ttgcgtgcagTGATTGATGTGATGAAGGAGGAGGTGGAGAAG
EST: CGAGGTCTTCCGCCGCGAGCTCCCCCTCTGCGTCCGCCTCCTCGCCGACG TGATTGATGTGATGAAGGAGGAGGTGGAGAAGAAGGGTGGTGATCGTAAGG
genomic: CGAGGTCTTCCGCCGCGAGCTCCCCCTCTGCGTCCGCCTCCTCGCCGACGgtaataacta ... ttgcgtgcagTGATTGATGTGATGAAGGAGGAGGTGGAGAAGAAGGGTGGTGATCGTAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCGCCATGGGTGACTGCATCCGGAGGCTCGAGGAGGAGATGGGCAAGATCGAGGTCTTCCGCCGCGAGCTCCCCCTCTGCGTCCGCCTCCTCGCCGACGgtaataactattaaacaaaaaaaaaagcctctttcttttttgttttgttttgtggtggcgagttgttgatttgggcatggcttgcgtgcag
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