1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGCGACACCCGACTTCTCCTTCTCCTCTTCCCCCGCCGTCGTGGAAGGGAGGAGAGCGGCGGCGCCGGCCACCGGCCACCGGAAGgttcgtctcctctctctccgccttctgctccccccggatgttcggttgctttgttggcccccacgcggttctcgctgattcgtgtacgctcttggattgttgctgttag
species | Oryza sativa |
transcript | LOC_Os07g01930.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGTCGTGGNAAGGGAGGAGAGCGGCGGCGCCGGCCACCGGCCACCGGAAG GGTTCGGGAGTGGTGGTGTTGGGTAGTGAAGTCGGCTGCGGCGATGTTGTCEST: gi|88461626|gb|CI695464.1|CI695464
genomic: CGTCGTGG-AAGGGAGGAGAGCGGCGGCGCCGGCCACCGGCCACCGGAAGgttcgtctcc ... ttgctgttagGGTTCGGGAGTGGTGGTGTTGGGTAGTGAAGTCGGCTGCGGCGATGTTGTC
EST: CCGTCGTGGAAGGGAGGAGAGCGGCGGCGCCGGCCACCGGCCACCGGAAG GGTTCGGGAGTGGTGGTGTTGGGTAGTGAAGTCGGCTGCGGCGATGTTGTCEST: gi|66917010|gb|CX103858.1|CX103858
genomic: CCGTCGTGGAAGGGAGGAGAGCGGCGGCGCCGGCCACCGGCCACCGGAAGgttcgtctcc ... ttgctgttagGGTTCGGGAGTGGTGGTGTTGGGTAGTGAAGTCGGCTGCGGCGATGTTGTC
EST: CCGTCGTGGAAGGGAGGAGAGCGGCGGCGCCGGCCACCGGCCACCGGAAG GGTTCGGGAGTGGTGGTGTTGGGTAGTGAAGTCGGCTGCGGCGATGTTGTCEST: gi|58601999|gb|CK012527.1|CK012527
genomic: CCGTCGTGGAAGGGAGGAGAGCGGCGGCGCCGGCCACCGGCCACCGGAAGgttcgtctcc ... ttgctgttagGGTTCGGGAGTGGTGGTGTTGGGTAGTGAAGTCGGCTGCGGCGATGTTGTC
EST: CCGTCGTGGAAGGGAGGAGAGCGGCGGCGCCGGCCACCGGCCACCGGAAG GGTTCGGGAGTGGTGGTGTTGGGTAGTGAAGTCGGCTGCGGCGATGTTGTCEST: gi|33680135|gb|CF308374.1|CF308374
genomic: CCGTCGTGGAAGGGAGGAGAGCGGCGGCGCCGGCCACCGGCCACCGGAAGgttcgtctcc ... ttgctgttagGGTTCGGGAGTGGTGGTGTTGGGTAGTGAAGTCGGCTGCGGCGATGTTGTC
EST: CCGTCGTGGAAGGGAGGAGAGCGGCGGCGCCGGCCACCGGCCACCGGAAG GGTTCGGGAGTGGTGGTGTTGGGTAGTGAAGTCGGCTGCGGCGATGTTGTC
genomic: CCGTCGTGGAAGGGAGGAGAGCGGCGGCGCCGGCCACCGGCCACCGGAAGgttcgtctcc ... ttgctgttagGGTTCGGGAGTGGTGGTGTTGGGTAGTGAAGTCGGCTGCGGCGATGTTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGACACCCGACTTCTCCTTCTCCTCTTCCCCCGCCGTCGTGGAAGGGAGGAGAGCGGCGGCGCCGGCCACCGGCCACCGGAAGgttcgtctcctctctctccgccttctgctccccccggatgttcggttgctttgttggcccccacgcggttctcgctgattcgtgtacgctcttggattgttgctgttag
- - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - AGGAGA