Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGCCGCCTCGCGCGGATCTGACCGCTTCCCTCGCCCTTCTCGCAGGATTCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatcaatctattctcatctccctttaacatctctattctatgttcacgccgtcgcagatctgttgattttcgccgccgcagattagattttgacttgatttttgttggttgcag

Basic information

species Oryza sativa
transcript LOC_Os06g51220.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58599231|gb|CK009759.1|CK009759
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|29679537|gb|CB675812.1|CB675812
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|58594868|gb|CF993176.1|CF993176
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|58695034|gb|CK083721.1|CK083721
EST:     GGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: GGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|33662445|gb|CF293412.1|CF293412
EST:     TCACCCATGAAGGGGGCCAAATCCAACGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|29621856|gb|CB626867.1|CB626867
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|58676420|gb|CK065107.1|CK065107
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|29628654|gb|CB633665.1|CB633665
EST:     AGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: AGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|29669077|gb|CB665352.1|CB665352
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|29665838|gb|CB662113.1|CB662113
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|58585904|gb|CF984212.1|CF984212
EST:     TCAGCCATGAAGGGGG-CAAATCCAAGGGCGCCGCCAAGCCGGAGGCCAA                         G-TGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|38471569|gb|CF955700.1|CF955700
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|33663483|gb|CF294450.1|CF294450
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|58593325|gb|CF991633.1|CF991633
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|29664374|gb|CB660649.1|CB660649
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTT-GGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGA
EST: gi|33659807|gb|CF282420.1|CF282420
EST:     AAGCCCGACGCCAA                         ATTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGTCAAGGGCAGGAA
genomic: AAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|396941641|gb|HO188298.1|HO188298
EST:     GCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: GCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|218502608|gb|FG949724.1|FG949724
EST:     TCAGCCATGAAGGGGGCCAAATCCAACGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|29665805|gb|CB662080.1|CB662080
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|29677199|gb|CB673474.1|CB673474
EST:     GCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: GCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|29622248|gb|CB627259.1|CB627259
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|58670107|gb|CK058793.1|CK058793
EST:     CGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGTGA
genomic: CGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAG-GA
EST: gi|29687336|gb|CB683611.1|CB683611
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAAGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|33663024|gb|CF293991.1|CF293991
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|325493080|gb|JG457604.1|JG457604
EST:     CCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: CCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|58675709|gb|CK064396.1|CK064396
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|58598470|gb|CK008998.1|CK008998
EST:     TCAGCCATGAAGGGGGCCAAATCCAA-GGCGCCGCCAAGCCCGACGCCAA                         GTGGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|218484316|gb|FG953183.1|FG953183
EST:     CCAATGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: CCAA-GCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|58587767|gb|CF986075.1|CF986075
EST:     GGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAG-CCGCGCGCCAAGGGCAGGA
genomic: GGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGC-CGCCAAGGGCAGGA
EST: gi|58696070|gb|CK084757.1|CK084757
EST:     CAAGGTGCGCCGCCAAGCCCTGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCTGGAGAAGCCCGCCGCCAAGGGCAGG
genomic: CAAGG-GCGCCGCCAAGCCC-GACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGC-GGAGAAGCCCGCCGCCAAGGGCAGG
EST: gi|163917754|gb|EG711288.1|EG711288
EST:     GCCCGACG-CAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: GCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|24208834|gb|AU225861.1|AU225861
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|58692800|gb|CK081487.1|CK081487
EST:     GGGG-CAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: GGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|58668756|gb|CK057442.1|CK057442
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|58680807|gb|CK069494.1|CK069494
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCG-CAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|58695392|gb|CK084079.1|CK084079
EST:     GGGCC-AATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: GGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|29686955|gb|CB683230.1|CB683230
EST:     CGCCGCCAAGCCNGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: CGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|33662765|gb|CF293732.1|CF293732
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|55408446|gb|CV720822.1|CV720822
EST:     GCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: GCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|29641324|gb|CB646331.1|CB646331
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|58696190|gb|CK084877.1|CK084877
EST:     GGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: GGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|33655093|gb|CF277707.1|CF277707
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|33666115|gb|CF297082.1|CF297082
EST:     TCAGCCATGAAGGGGGCCAAATCC-AGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|29669076|gb|CB665351.1|CB665351
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|58688692|gb|CK077379.1|CK077379
EST:     AAGGGCGCCG-CAAGCCCGACGCCAA                         G-TGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCG-CGGCAAGGGCAGGAA
genomic: AAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|58692927|gb|CK081614.1|CK081614
EST:     TCAGCCATGAAGGGGGCC-AATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|38474110|gb|CF958242.1|CF958242
EST:     GCCCGACGCC-A                         GTTGGGTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: GCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|29643663|gb|CB648670.1|CB648670
EST:     GCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: GCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|4716467|gb|AU057583.1|AU057583
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|33665955|gb|CF296922.1|CF296922
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|29671952|gb|CB668227.1|CB668227
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|29687600|gb|CB683875.1|CB683875
EST:     TCAGCCATGAAGGGGGCCAAAT-CAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|58675087|gb|CK063774.1|CK063774
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|29688721|gb|CB684996.1|CB684996
EST:     CATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: CATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|29670694|gb|CB666969.1|CB666969
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|33653508|gb|CF276122.1|CF276122
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|29665837|gb|CB662112.1|CB662112
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|218499011|gb|FG954723.1|FG954723
EST:     GCGCCGCCAAGCCCGACGCCAA                         GTTTGGCTGT-AAGAGCT-AGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGG
genomic: GCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagG-TTGGCTGTGAAGAG-TAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGG
EST: gi|29679536|gb|CB675811.1|CB675811
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|218497459|gb|FG955185.1|FG955185
EST:     TCAGCCATGAAGGGGGCCAAATCCAATGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|29665806|gb|CB662081.1|CB662081
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|38481706|gb|CF965788.1|CF965788
EST:     TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
EST: gi|33664669|gb|CF295636.1|CF295636
EST:     TCAGCCATTAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAA                         GTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA
genomic: TCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 70 (upstream exon), 75 (downstream exon)
Score: 275

CACGCCGCCTCGCGCGGATCTGACCGCTTCCCTCGCCCTTCTCGCAGGATTCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAGCCCGACGCCAAgtaataatca ... ttggttgcagGTTGGCTGTGAAGAGTAAGGGCGCGGAGAAGCCCGCCGCCAAGGGCAGGAAGGGGAAGGCCGGCAAGGACCCCAACAAGCCCAAGAGGGCTCCCTCCGCT




<











<


<