Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCACCAATCCGATCCTCTTCTCTTCTCTTCTCTTCTTCCCCACATCCAGTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgccttttcctgattttcttttcttctagatcgatcgtcgatttggtttggtttggtttcttgatgcgctcatcccaatctgactgactcactggattcctcctccttgcag

Basic information

species Oryza sativa
transcript LOC_Os06g51150.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88394697|gb|CI622571.1|CI622571
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58590615|gb|CF988923.1|CF988923
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|88731109|gb|CI754722.1|CI754722
EST:     AACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: AACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|88390874|gb|CI611100.1|CI611100
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58655427|gb|CK044107.1|CK044107
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58692972|gb|CK081659.1|CK081659
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|29628364|gb|CB633375.1|CB633375
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|55828144|gb|AU062662.3|AU062662
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGNTCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|117240442|gb|CT842802.1|CT842802
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58684723|gb|CK073410.1|CK073410
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58663995|gb|CK052681.1|CK052681
EST:     AAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: AAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58678433|gb|CK067120.1|CK067120
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|29623121|gb|CB628132.1|CB628132
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|29619347|gb|CB624359.1|CB624359
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58666558|gb|CK055244.1|CK055244
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58596030|gb|CK006558.1|CK006558
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58669083|gb|CK057769.1|CK057769
EST:     AATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: AATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|29672050|gb|CB668325.1|CB668325
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58694437|gb|CK083124.1|CK083124
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58668961|gb|CK057647.1|CK057647
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|38474000|gb|CF958132.1|CF958132
EST:     CAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: CAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58608999|gb|CK037032.1|CK037032
EST:     TTCGATTCTCATCTCTCCCACAACAAAGTCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: TTCGATTCTCATCTCTCCCACAACAAA-TCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58598738|gb|CK009266.1|CK009266
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58606081|gb|CK034114.1|CK034114
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58678741|gb|CK067428.1|CK067428
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58690037|gb|CK078724.1|CK078724
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58695135|gb|CK083822.1|CK083822
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58596063|gb|CK006591.1|CK006591
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58663183|gb|CK051869.1|CK051869
EST:     CGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: CGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58608126|gb|CK036159.1|CK036159
EST:     TTCGATTCTCATCTCTCCCACGGAGGAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: TTCGATTCTCATCTCTCCCACA-ACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|88424370|gb|CI607956.1|CI607956
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|2310411|gb|C26566.1|C26566
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|55411587|gb|CV723963.1|CV723963
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58599674|gb|CK010202.1|CK010202
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58613055|gb|CK040767.1|CK040767
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58666199|gb|CK054885.1|CK054885
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58658755|gb|CK047435.1|CK047435
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58692263|gb|CK080950.1|CK080950
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|88692668|gb|CI736243.1|CI736243
EST:     AACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: AACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58597710|gb|CK008238.1|CK008238
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58597113|gb|CK007641.1|CK007641
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58601731|gb|CK012259.1|CK012259
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58674842|gb|CK063529.1|CK063529
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|58671674|gb|CK060360.1|CK060360
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
EST: gi|29616047|gb|CB621059.1|CB621059
EST:     GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAG                         CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC
genomic: GTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 73 (downstream exon)
Score: 38

CACCACCAATCCGATCCTCTTCTCTTCTCTTCTCTTCTTCCCCACATCCAGTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgcctt ... ctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGCGCCCCCGTCTGGAACAACAACTCCGCCCTCACCGTCGGAGAGCGAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACCACCAATCCGATCCTCTTCTCTTCTCTTCTCTTCTTCCCCACATCCAGTTCGATTCTCATCTCTCCCACAACAAATCACGCCATGGATCCCTACAAGgtgccgccttttcctgattttcttttcttctagatcgatcgtcgatttggtttggtttggtttcttgatgcgctcatcccaatctgactgactcactggattcctcctccttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA