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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCGACCCCAACCGCGCCGCCTCCCAGAAGGCCCTCCAGCACAAGAAGGAGATCGCCAAGCGCCTCGGCCGCCCCCTCGTCTCCACCACCCCCTACGAGgttcgattgtttccacccccaatccccaatccatcgattcgattctagggttctcctctctcacctatgcaatctcactctaccctag

Basic information

species Oryza sativa
transcript LOC_Os06g50050.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g50050.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G075584_T02 (Zea mays), 5'ss of exon 1
GCTCGACCCCAACCGCGCCGCCTCCCAGAAGGCCCTCCAGCACAAGAAGGAGATCGCCAAGCGCCTCGGCCGCCCCCTCGTCTCCACCACCCCCTACGAGgttcgattgtttccacccccaatc---cccaatccatcgattcgattctagggttctcctctctcacctatgcaatctcactctaccctag-------------
 ||||| ||||||||||||||||| |||||||| |  ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||  |   |||||||  |  |    ||    |  | || |   |||||||||| | || |||  | |  |||||   | ||  | |               
CCTCGATCCCAACCGCGCCGCCTCTCAGAAGGCGCAGCAGCAGAAGAAGGAGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccg--tccctccacccgtatccgtatccgcctccccaatccccatctagggttcacttcactc--cgactcaatcctccgctggcgtctcgctcaccgacag

upper sequence: LOC_Os06g50050.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G158136_T01 (Zea mays), 5'ss of exon 1
GCTCGACCCCAACCGCGCCGCCTCCCAGAAGGCCCTCCAGCACAAGAAGGAGATCGCCAAGCGCCTCGGCCGCCCCCTCGTCTCCACCACCCCCTACGAGgttcgattgtttccacccccaatccccaatccatcgattcgattctagggttctcctctctcacctat-gcaatctcactctaccctag
 |||||||||||||||||||| ||||||||||| |  || || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| || | |  ||| | | |   |||| ||| |  | |||   ||    |  |||  | |||  |  | |   |||| |||  |   ||
CCTCGACCCCAACCGCGCCGCTTCCCAGAAGGCGCAGCAACAGAAGAAGGAGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgcctccccactc--ccccctatcgag-ggttcacctcacttggcctcaaccctcctccgttggcgtctccctcaccgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88730849|gb|CI754462.1|CI754462
EST:     AGATCGCCAAGCGCCTCGGCCGCCCCCTCGTCTCCACCACCCCCTACGAG                         GATGTGATTGCTTGCGATGTCATCAACCCCGACCACATCGACGTCGAGTTC
genomic: AGATCGCCAAGCGCCTCGGCCGCCCCCTCGTCTCCACCACCCCCTACGAGgttcgattgt ... tctaccctagGATGTGATTGCTTGCGATGTCATCAACCCCGACCACATCGACGTCGAGTTC
EST: gi|29622367|gb|CB627378.1|CB627378
EST:     AGATCGCCAAGCGCCTCGGCCGCCCCCTCGTCTCCACCACCCCCTACGAG                         GATGTGATTGCTTGCGATGTCATCAACCCCGACCACATCGACGTCGAGTTC
genomic: AGATCGCCAAGCGCCTCGGCCGCCCCCTCGTCTCCACCACCCCCTACGAGgttcgattgt ... tctaccctagGATGTGATTGCTTGCGATGTCATCAACCCCGACCACATCGACGTCGAGTTC