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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGCGACGGTGCCGGTGAGGCGGCGCTGCGAGGGCACGGCCATGGGGGCCATCACGCTCGACCTCCGCCCCGGCAACGGCGTCGGGCCCTTCACCCTCGgtgagctcctcctcccccccaaccctaaccacccaccttccgccacggttgggatcgccgtcgtcgtcggttgcttgcttgtttcctctcgctttgccacggatatgtatatgcttgtgttggaagcaatcgccgggcttccattctgtggctggtgaattcttacgtgggaggtcgcgattgctgctgctgctgcag

Basic information

species Oryza sativa
transcript LOC_Os06g49990.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g49990.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G116434_T01 (Zea mays), 5'ss of exon 1
CCGGCGACGGTGCCGGTGAGGCGGCGCTGCGAGGGCACGGCCATGGGGGCCATCACGCTCGACCTCCGCCCCGGCAACGGCGTCGGGCCCTTCACCCTCGgtgagctcctcctcccccccaaccctaaccacccaccttccgccacggttgggatcgccgtcgtcgtcggttgcttgcttgttt--cctctcgctttgccacggatatgtatatgcttgtgttggaagcaatcgccgggcttccattctgtggctggtgaattcttacgtgggaggtcgcgattgctgctgctgctgcag
| ||| ||| |||||||| ||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||   ||||||||| ||||||||||||||||||               ||||||||||||||      |||| |||  || || | ||  |||   || ||||| |||| ||  ||||||  ||||| | |||   | | |  ||                                                                                   
CAGGCCACGCTGCCGGTGCGGCGGCGGTGCGAGGGCACGGCCATGGGAGCCATCACGCTTGACCTCCGCCCCGGGCTCGGCGTCGGCCCCTTCACCCTCGgtgag---------------aaccctaaccacccg----acgccccggcaggaataggcg--gtctctggctgcttccttgctttgcctctccgtttgc-agggaagggaaaacactcaaaa------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11442702|gb|BF430605.1|BF430605
EST:     GCTCGACCTCCGCCCCGGCAACGGCGTCGGGCCCTTCACCCTCG                         GGATGCCGATTTCCGATGCGTTCGCGCAGATAGAGGGCCAGCCAACACTCT
genomic: GCTCGACCTCCGCCCCGGCAACGGCGTCGGGCCCTTCACCCTCGgtgagctcct ... gctgctgcagGGATGCCGATTTCCGATGCGTTCGCGCAGATAGAGGGCCAGCCAACACTCT
EST: gi|33675671|gb|CF303910.1|CF303910
EST:     CGGCAACGGCGTCGGGCCCTTCACCCTCG                         GGATGCCGATTTCCGATGCGTTCGCGCAGATAGAGGGCCAGCCAACACTCT
genomic: CGGCAACGGCGTCGGGCCCTTCACCCTCGgtgagctcct ... gctgctgcagGGATGCCGATTTCCGATGCGTTCGCGCAGATAGAGGGCCAGCCAACACTCT