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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACCGACATCCCGGAGCGGATCGCGGAGCGCGACCCCTCCTCCCTCCGCCACCGCCGCCGCCGCCGATCTACCTCCGCCGCCGCGCCCTCCCCTCGCCGgtccgtcgatttcagccctggccgtgcttgatttccgccgattgtgtgggcaatctcgttttaatctcgtgcgtgtttttttacttacgattttgttttcgttttggggccag

Basic information

species Oryza sativa
transcript LOC_Os06g49810.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33677587|gb|CF305826.1|CF305826
EST:     GATCTACCTCCGCCGCCGCGCCCTCCCCTCGCCG                         TGCGTGGCTGGTCTCGTGGATTTTGAGCTAGATTGGGCCGGGAATGGCGGG
genomic: GATCTACCTCCGCCGCCGCGCCCTCCCCTCGCCGgtccgtcgat ... ttggggccagTGCGTGGCTGGTCTCGTGGATTTTGAGCTAGATTGGGCCGGGAATGGCGGG
EST: gi|58609868|gb|CK037901.1|CK037901
EST:     ATCTACCTCCGCCGCCGCGCCCTCCCCTCGCCG                         TGCGTGGCTGGTCTCGTGGATTTTGAGCTAGATTGGGCCGGGAATGGCGGG
genomic: ATCTACCTCCGCCGCCGCGCCCTCCCCTCGCCGgtccgtcgat ... ttggggccagTGCGTGGCTGGTCTCGTGGATTTTGAGCTAGATTGGGCCGGGAATGGCGGG