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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTCAGGCCACAAGAATTCCTCCTCTCCGAAAACTCTCCCCTCTCTCTGCTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgccacggtcgccacctcatctcatcttcttcttcttcttctccaagatttgcaagaaaagaacccgtcaagctcaattcaatctctagtcaa...

Basic information

species Oryza sativa
transcript LOC_Os06g49110.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29655802|gb|CB652077.1|CB652077
EST:     GCCGCATCATCTCCTCCCT-TTATACTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: GCCGCATCATCTCCT-CCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88357316|gb|CI622165.1|CI622165
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTATTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATTCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88356951|gb|CI620839.1|CI620839
EST:     CTGCTGTGGCCGAATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88411271|gb|CI564392.1|CI564392
EST:     GCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCACCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: GCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|29645008|gb|CB650015.1|CB650015
EST:     GCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: GCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88696160|gb|CI739735.1|CI739735
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|29643724|gb|CB648731.1|CB648731
EST:     CTGTGGCCGCATCATCCT-TTCAGCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGTGGCCGCATCAT-CTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88717412|gb|CI740922.1|CI740922
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88426580|gb|CI579409.1|CI579409
EST:     ATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: ATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|4880898|gb|AU065197.1|AU065197
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88406909|gb|CI578437.1|CI578437
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88730951|gb|CI754564.1|CI754564
EST:     GTGGTCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: GTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|29637541|gb|CB642550.1|CB642550
EST:     GCATCATCCCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGCCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: GCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|29619411|gb|CB624423.1|CB624423
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|29679002|gb|CB675277.1|CB675277
EST:     ATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: ATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88301073|gb|CI594599.1|CI594599
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88370758|gb|CI592524.1|CI592524
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88387378|gb|CI582896.1|CI582896
EST:     CTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|27554097|gb|CA997997.1|CA997997
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88422647|gb|CI573809.1|CI573809
EST:     ATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: ATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|29667711|gb|CB663986.1|CB663986
EST:     CTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|29641133|gb|CB646140.1|CB646140
EST:     GCCGCATCATCTCCCCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: GCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88362048|gb|CI607048.1|CI607048
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|29661434|gb|CB657709.1|CB657709
EST:     CATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|66928178|gb|CX115026.1|CX115026
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|29638674|gb|CB643683.1|CB643683
EST:     GTGGTCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: GTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|29681299|gb|CB677574.1|CB677574
EST:     CTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88377413|gb|CI602898.1|CI602898
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88692419|gb|CI735994.1|CI735994
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|700999|gb|D47290.1|D47290
EST:     GCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: GCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|86902073|gb|CI300312.1|CI300312
EST:     GCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: GCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|8858380|gb|AU095698.1|AU095698
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88360295|gb|CI612014.1|CI612014
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|58679478|gb|CK068165.1|CK068165
EST:     CTGCTGTGGCCGCATCATCTCGTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|29687455|gb|CB683730.1|CB683730
EST:     ATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: ATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88301014|gb|CI592194.1|CI592194
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|58671309|gb|CK059995.1|CK059995
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88694918|gb|CI738956.1|CI738956
EST:     GTGGTCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: GTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88729601|gb|CI751404.1|CI751404
EST:     TGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: TGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|29682583|gb|CB678858.1|CB678858
EST:     ATCATCTCCTCCTCTTCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: ATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|2312119|gb|C28274.1|C28274
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|29641824|gb|CB646831.1|CB646831
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|29666981|gb|CB663256.1|CB663256
EST:     CTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88361006|gb|CI604573.1|CI604573
EST:     GCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: GCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|701711|gb|D48002.1|D48002
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88364308|gb|CI612257.1|CI612257
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88415193|gb|CI584016.1|CI584016
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88577475|gb|CI674064.1|CI674064
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|58606899|gb|CK034932.1|CK034932
EST:     GCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGGCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: GCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88372746|gb|CI612674.1|CI612674
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|29637162|gb|CB642171.1|CB642171
EST:     CTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
EST: gi|88326610|gb|CI658329.1|CI658329
EST:     CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAG                         CTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT
genomic: CTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 111

AACTCAGGCCACAAGAATTCCTCCTCTCCGAAAACTCTCCCCTCTCTCTGCTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgc ... gacgttgcagCTAGGCCATGGCGTCCACCGTCTCCTTCTCCCCGGCCAACGTGCAGATGCTCCAGGGCAGGAGCTGCCACGGCCACGCGGCGTTCGGGGGCTGCTCCGCC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACTCAGGCCACAAGAATTCCTCCTCTCCGAAAACTCTCCCCTCTCTCTGCTGCTGTGGCCGCATCATCTCCTCCTCATCTTCTTCTCCACAGCCTCCAGgtacgtgtgccacggtcgccacctcatctcatcttcttcttcttcttctccaagatttgcaagaaaagaacccgtcaagctcaattcaatctctagtcaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa