1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TCTCTCCTTCCTCCACTCCCGCAAAAACCCTAGCTAGGGCCGCCTCCTCGCCGCCCACCGCCTCCACGCCGCCGCCTCCCTCCTCCCGACGAGCCGgtgaggaatcccccatcccttcccgcctctaggctcgtgaggccaccgccctacctggtgctgattccgattcag
species | Oryza sativa |
transcript | LOC_Os06g47350.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCGCCGCCCACCGCCTCCACGCCGCCGCCTCCCTCCTCCCGACGAGCCG TTTGGTAGGTTTTCTTCAAGCGCGAGATTATTCTCCAAGGGAGGTAAGGTGEST: gi|88575206|gb|CI669351.1|CI669351
genomic: CTCGCCGCCCACCGCCTCCACGCCGCCGCCTCCCTCCTCCCGACGAGCCGgtgaggaatc ... tccgattcagTTTGGTAGGTTTTCTTCAAGCGCGAGATTATTCTCCAAGGGAGGTAAGGTG
EST: CTCGCCGCCCACCGNCTCCACGCCGCCGCCTCCCTCCTCCCGACGAGCCG TTTGGTAGGTTTTCTTCAAGCGCGAGATTATTCTCCAAGGGAGGTAAGGTGEST: gi|88736559|gb|CI760067.1|CI760067
genomic: CTCGCCGCCCACCGCCTCCACGCCGCCGCCTCCCTCCTCCCGACGAGCCGgtgaggaatc ... tccgattcagTTTGGTAGGTTTTCTTCAAGCGCGAGATTATTCTCCAAGGGAGGTAAGGTG
EST: CTCGCCGCCCACCGCCTCCACGCCGCCGCCTCCCTCCTCCCGACGAGCCG TTTGGTAGGTTTTCTTCAAGCGCGAGATTATTCTCCAAGGGAGGTAAGGTG
genomic: CTCGCCGCCCACCGCCTCCACGCCGCCGCCTCCCTCCTCCCGACGAGCCGgtgaggaatc ... tccgattcagTTTGGTAGGTTTTCTTCAAGCGCGAGATTATTCTCCAAGGGAGGTAAGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCTCCTTCCTCCACTCCCGCAAAAACCCTAGCTAGGGCCGCCTCCTCGCCGCCCACCGCCTCCACGCCGCCGCCTCCCTCCTCCCGACGAGCCGgtgaggaatcccccatcccttcccgcctctaggctcgtgaggccaccgccctacctggtgctgattccgattcag
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