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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGCTCGAGCCCCGACAGCAAGTGTGAGCTACTGAACTCGAGACCCTCCTGTCGCGCGGCGCGGCGCGGCGAGAGTGGCCTTTTGATCCGACGAAGCTAgtaagttccctcgctcatccgatcatctcgtccgatctgtgagctgggttgctgattgatcgtagttgggctccatgagcatcagggtttggccgacctg...

Basic information

species Oryza sativa
transcript LOC_Os06g45850.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33659200|gb|CF281813.1|CF281813
EST:     TGTCGCGCGGCGCGGCGTGGCGAGAGTGGCCTTTTGATCCGACGAAGCTA                         ATAGGATGTCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCA
genomic: TGTCGCGCGGCGCGGCGCGGCGAGAGTGGCCTTTTGATCCGACGAAGCTAgtaagttccc ... ccatttggagATAGGATGTCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCA
EST: gi|58682991|gb|CK071678.1|CK071678
EST:     GCGCGGCGCGGCGCGGCGAGAGTGGCCTTTTGATCCGACGAAGC--                         -TA-GATGTCGGAAGCAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGC
genomic: GCGCGGCGCGGCGCGGCGAGAGTGGCCTTTTGATCCGACGAAGCTAgtaagttccc ... ccatttggagATAGGATGTCGGAA-CAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGC