1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACCACCCCGCGCCGCGCCGCCGTCTACGGATCCCCGCTCCTCGCTCGAGCGAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGgtgagcactccattcgcgccgcggcgccctctctctctctcgttttgttcccacggatttctgcgggggatctcgttcttgggtggaaatgggaggaggg...
species | Oryza sativa |
transcript | LOC_Os06g40840.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAG GTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTGEST: gi|88343226|gb|CI627186.1|CI627186
genomic: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGgtgagcactc ... cgtttagcagGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTG
EST: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAG GTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTGEST: gi|88732075|gb|CI757252.1|CI757252
genomic: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGgtgagcactc ... cgtttagcagGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTG
EST: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAG GTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTGEST: gi|88393215|gb|CI616699.1|CI616699
genomic: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGgtgagcactc ... cgtttagcagGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTG
EST: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGGACCGGGTGGGTTCCCCAG GTTGTTGAGCTAGAATGGGAGTGGCAGGGCAAAATGATCCTTTGATAGGTGEST: gi|88363588|gb|CI618149.1|CI618149
genomic: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGgtgagcactc ... cgtttagcagGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTG
EST: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGGACCGGGTGGGTTCCCCAG GTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTGEST: gi|88694716|gb|CI738754.1|CI738754
genomic: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGgtgagcactc ... cgtttagcagGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTG
EST: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAG GTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTGEST: gi|95100601|gb|CI692304.1|CI692304
genomic: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGgtgagcactc ... cgtttagcagGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTG
EST: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAG GTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTGEST: gi|88576964|gb|CI673507.1|CI673507
genomic: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGgtgagcactc ... cgtttagcagGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTG
EST: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAG GTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTGEST: gi|88761027|gb|CI770583.1|CI770583
genomic: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGgtgagcactc ... cgtttagcagGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTG
EST: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAG GTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTGEST: gi|88827256|gb|CI777821.1|CI777821
genomic: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGgtgagcactc ... cgtttagcagGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTG
EST: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAG GTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTGEST: gi|88404901|gb|CI685335.1|CI685335
genomic: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGgtgagcactc ... cgtttagcagGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTG
EST: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAG GTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTGEST: gi|88393688|gb|CI621183.1|CI621183
genomic: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGgtgagcactc ... cgtttagcagGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTG
EST: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAG GTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTGEST: gi|88386526|gb|CI575304.1|CI575304
genomic: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGgtgagcactc ... cgtttagcagGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTG
EST: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAG GTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTGEST: gi|88577500|gb|CI674092.1|CI674092
genomic: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGgtgagcactc ... cgtttagcagGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTG
EST: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAG GTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTGEST: gi|88590104|gb|CI708933.1|CI708933
genomic: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGgtgagcactc ... cgtttagcagGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTG
EST: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAG GTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTGEST: gi|88381767|gb|CI682440.1|CI682440
genomic: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGgtgagcactc ... cgtttagcagGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTG
EST: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAG GTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTGEST: gi|88394161|gb|CI684833.1|CI684833
genomic: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGgtgagcactc ... cgtttagcagGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTG
EST: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAG GTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTGEST: gi|88315674|gb|CI615546.1|CI615546
genomic: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGgtgagcactc ... cgtttagcagGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTG
EST: GAGAACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAG GTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTG
genomic: GAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGgtgagcactc ... cgtttagcagGTTGTTGAGCTAGAATGGGAGTGGCAGGGCACAATGATCCTTTGATAGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCACCCCGCGCCGCGCCGCCGTCTACGGATCCCCGCTCCTCGCTCGAGCGAGCACGAAAGCCCTAGCGCGCCGCCCCCTGCACCGGGTGGGTTCCCCAGgtgagcactccattcgcgccgcggcgccctctctctctctcgttttgttcccacggatttctgcgggggatctcgttcttgggtggaaatgggaggaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcggcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcggggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaggag