1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCGATCGAAGCTACCACCCATCCCACCTTGCCCTTCCTTCGCCGCCGATTCCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttcttgcaatctttctcttctccgtcgcttggcggatagtgggtgggattggattgttgttcttggtcacgattcacctcgtatccgcttgttt...
species | Oryza sativa |
transcript | LOC_Os06g40720.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88670009|gb|CI724125.1|CI724125
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGNGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88672156|gb|CI726272.1|CI726272
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88670336|gb|CI724452.1|CI724452
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCACCTAGGACAGCCGAGTGAAGTGCCEST: gi|88415313|gb|CI586519.1|CI586519
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88373009|gb|CI640460.1|CI640460
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88904947|gb|CI712246.1|CI712246
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88302426|gb|CI668272.1|CI668272
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88368777|gb|CI649985.1|CI649985
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88594383|gb|CI714341.1|CI714341
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGNCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88673974|gb|CI728087.1|CI728087
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88667293|gb|CI715451.1|CI715451
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88593480|gb|CI713434.1|CI713434
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGGGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88673365|gb|CI727478.1|CI727478
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88670643|gb|CI724759.1|CI724759
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88904636|gb|CI711935.1|CI711935
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88665950|gb|CI716106.1|CI716106
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|89172319|gb|CI721378.1|CI721378
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGNGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88973647|gb|CI718075.1|CI718075
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88673254|gb|CI726029.1|CI726029
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAANTGTTGTTTGGTGCTTGTCCAGCTAGGACAGNCGAGTGAAGTGCCEST: gi|88677204|gb|CI729862.1|CI729862
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|89171456|gb|CI720515.1|CI720515
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88673646|gb|CI727759.1|CI727759
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88667277|gb|CI715536.1|CI715536
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88671406|gb|CI725522.1|CI725522
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88973511|gb|CI717939.1|CI717939
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCCGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88441153|gb|CI602175.1|CI602175
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAAGTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88973656|gb|CI718084.1|CI718084
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGNCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88673461|gb|CI727574.1|CI727574
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88578280|gb|CI687200.1|CI687200
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88580296|gb|CI697213.1|CI697213
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|88670231|gb|CI723479.1|CI723479
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGNGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCCEST: gi|58671024|gb|CK059710.1|CK059710
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
EST: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAG GTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
genomic: CCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttct ... tttgtttcagGTACAACTGTTGTTTGGTGCTTGTCCAGCTAGGACAGCCGAGTGAAGTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGATCGAAGCTACCACCCATCCCACCTTGCCCTTCCTTCGCCGCCGATTCCGATCTGGGCCGCCGGCGACGGCGAAACACAGGCAAAGCAAAGATAAAGgttcttttcttgcaatctttctcttctccgtcgcttggcggatagtgggtgggattggattgttgttcttggtcacgattcacctcgtatccgcttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctcc