1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TACTACCAGTCGCGCATCCACGACCTGCAGCTCCAGATCCGCCAAGGGACGGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacgaccccctccccccgcgcgcggggcagtcgaatccgtctcgtggtttggttttaatcttgccgcgtttactcgcaaccctagtttcccgtc...
species | Oryza sativa |
transcript | LOC_Os06g39870.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|88959475|gb|CI716844.1|CI716844
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|89172082|gb|CI721141.1|CI721141
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|88669214|gb|CI719352.1|CI719352
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|88672636|gb|CI726752.1|CI726752
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|88667640|gb|CI722379.1|CI722379
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|88692546|gb|CI736121.1|CI736121
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|88334119|gb|CI641170.1|CI641170
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|88959447|gb|CI716816.1|CI716816
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|88688166|gb|CI731742.1|CI731742
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|88671979|gb|CI726095.1|CI726095
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|88908591|gb|CI713149.1|CI713149
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|88670889|gb|CI725005.1|CI725005
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GGACAACCTCAGCCGNCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|88391263|gb|CI595517.1|CI595517
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GGACAACCTCAGCCGCCTCGAGGCC-AGCGGAACGTCCTCAATTACCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|88595106|gb|CI715262.1|CI715262
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|88676270|gb|CI730383.1|CI730383
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GACANAC-TCACCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|88337057|gb|CI628143.1|CI628143
genomic: GACA-ACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|88676783|gb|CI730896.1|CI730896
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|88671588|gb|CI725704.1|CI725704
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|88594726|gb|CI714684.1|CI714684
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|88324402|gb|CI566215.1|CI566215
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGEST: gi|88345698|gb|CI630966.1|CI630966
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
EST: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAG TTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
genomic: GGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacg ... gatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTACCAGTCGCGCATCCACGACCTGCAGCTCCAGATCCGCCAAGGGACGGACAACCTCAGCCGCCTCGAGGCCCAGCGGAACGTCCTCAATTCCCAAGgtaaacgacgaccccctccccccgcgcgcggggcagtcgaatccgtctcgtggtttggttttaatcttgccgcgtttactcgcaaccctagtttcccgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccgcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggcag