1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCCGCCGCCGCGGAGGAGTTCGTGAAGGGCCGCGTCACCCCCAACGGCGTCGCCGTCATCACCCTCGACCGCCCCAAGGCCCTCAACGCCATGAACCTCGgtgagggtcgctcctctctctctctctctctctctctctctctctctctctctctcttcctcctcctatttgggttactgggagtagggcgaccgggccg...
species | Oryza sativa |
transcript | LOC_Os06g39344.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCCGTCATCACCCTCGACCGCCCCAAGGCCCTCAACGCCATGAACCTCG AAATGGACCTTCGATACAAGGCATTTCTTGATGAATGGGAAACAAATCCAAEST: gi|88688897|gb|CI732473.1|CI732473
genomic: CGCCGTCATCACCCTCGACCGCCCCAAGGCCCTCAACGCCATGAACCTCGgtgagggtcg ... atgattgcagAAATGGACCTTCGATACAAGGCATTTCTTGATGAATGGGAAACAAATCCAA
EST: CGCCGTCATCACCCTCGACCGCCCCAAGGCCCTCAACGCCATGAACCTCG AAATGGACCTTCGATACAAGGCATTTCTTGATGAATGGGAAACAAATCCAAEST: gi|88692972|gb|CI736547.1|CI736547
genomic: CGCCGTCATCACCCTCGACCGCCCCAAGGCCCTCAACGCCATGAACCTCGgtgagggtcg ... atgattgcagAAATGGACCTTCGATACAAGGCATTTCTTGATGAATGGGAAACAAATCCAA
EST: CGCCGTCATCACCCTCGACCGCCCCAAGGCCCTCAACGCCATGAACCTCG AAATGGACCTTCGATACAAGGGC-TTTCTTGATGAATGGGAAACAAATCCAEST: gi|88736738|gb|CI760246.1|CI760246
genomic: CGCCGTCATCACCCTCGACCGCCCCAAGGCCCTCAACGCCATGAACCTCGgtgagggtcg ... atgattgcagAAATGGACCTTCGATACAAGG-CATTTCTTGATGAATGGGAAACAAATCCA
EST: CGCCGTCATCACCCTCGACCGCCCCAAGGCCCTCAACGCCATGAACCTCG AAATGGACCTTCGATACAAGGCATTTCTTGATGAATGGGAAACAAATCCAAEST: gi|88690849|gb|CI734928.1|CI734928
genomic: CGCCGTCATCACCCTCGACCGCCCCAAGGCCCTCAACGCCATGAACCTCGgtgagggtcg ... atgattgcagAAATGGACCTTCGATACAAGGCATTTCTTGATGAATGGGAAACAAATCCAA
EST: CGCCGTCATCACCCTCGACCGCCCCAAGGCCCTCAACGCCATGAACCTCG AAATGGACCTTCGATACAAGGCATTTCTTGATGAATGGGAAACAAATCCAAEST: gi|88739459|gb|CI762967.1|CI762967
genomic: CGCCGTCATCACCCTCGACCGCCCCAAGGCCCTCAACGCCATGAACCTCGgtgagggtcg ... atgattgcagAAATGGACCTTCGATACAAGGCATTTCTTGATGAATGGGAAACAAATCCAA
EST: CGCCGTCATCACCCTCGACCGCCCCAAGGCCCTCAACGCCATGAACCTCG AAATGGACCTTCGATACAAGGCATTTCTTGATGAATGGGAAACAAATCCAAEST: gi|88415000|gb|CI601832.1|CI601832
genomic: CGCCGTCATCACCCTCGACCGCCCCAAGGCCCTCAACGCCATGAACCTCGgtgagggtcg ... atgattgcagAAATGGACCTTCGATACAAGGCATTTCTTGATGAATGGGAAACAAATCCAA
EST: CGCCGTCATCACCCTCGACCGCCCCAAGGCCCTCAACGCCATGAAACTCG AAATGGACCTTCGATACAAGGCATTTCTTGATGAATGGGAAACAAATCCAA
genomic: CGCCGTCATCACCCTCGACCGCCCCAAGGCCCTCAACGCCATGAACCTCGgtgagggtcg ... atgattgcagAAATGGACCTTCGATACAAGGCATTTCTTGATGAATGGGAAACAAATCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGCCGCCGCGGAGGAGTTCGTGAAGGGCCGCGTCACCCCCAACGGCGTCGCCGTCATCACCCTCGACCGCCCCAAGGCCCTCAACGCCATGAACCTCGgtgagggtcgctcctctctctctctctctctctctctctctctctctctctctctcttcctcctcctatttgggttactgggagtagggcgaccgggccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggcgac