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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTGCCTCCGCCCACCGCGCCGAGGCTGCCGCGGCCGGATCGCCTCGTGCTTGGCCCCGCCGCCGGCCAGGGACGCCCCGACCGCCTCCAGTGCCAAGgttttcttctccttcctcgtccgtactccccatccgtttgctgttctgtggcccaaatgctgctcggtttggatgtggcttttggcagaaccatgcttgc...

Basic information

species Oryza sativa
transcript LOC_Os06g37430.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g37430.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G143688_T01 (Zea mays), 5'ss of exon 1
------TGCCTGCCTCCGCCCACCGCGCCGAGGCTGCCGCGGCCGGATCGCCTCGTGCTTGGCCCCGCCGCCGGCCAGGGACGCCCCGACCGCCTCCAGTGCCAAGgttttcttctccttcctcgtccgtactccccatccgtttgctgttctgtggcccaaatgctgctcggtttggatgtggcttttggca----gaaccatgcttgc
      |||||||| || || |||||||||| ||      | || || |  |||||||| || |||||||| || ||||| |||||||||||||||||||||| ||||    |  | ||  | | || | |  | |||| | |      ||  |||      |||  |   | || |    | | |   | ||    |  | ||    | 
GGCGTGTGCCTGCCACCCCCAACCGCGCCGAAGC------GACCTGACCATCTCGTGCTCGGTCCCGCCGCTGGACAGGGCCGCCCCGACCGCCTCCAGTGCCGAGgt----taatactctcgcttcggcaagctccattcatgctgaatttagtgatttttatggaggctgcttagatctttgttcgagacatttcgggctatctaggt

upper sequence: LOC_Os06g37430.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G038667_T03 (Zea mays), 5'ss of exon 3
------TGCCTGCCTCCGCCCACCGCGCCGAGGCTGCCGCGGCCGGATCGCCTCGTGCTTGGCCCCGCCGCCGGCCAGGGACGCCCCGACCGCCTCCAGTGCCAAGgttttcttctccttcctcgtccgtactccccatcc---gtttgctgttctgtggcccaaatgctgctcggtttggatgtggcttttggcagaaccatgcttgc
      |||||||| || || |||||||||| ||      |||| || |  |||||||| |||||||||||||| ||||  |||||||||||||| ||||||| |||||        |    | |   |  |   |||| |    ||| ||| ||| |     |  ||||      || |   | | | ||| |      |  | |   
GGTGTGTGCCTGCCACCCCCAACCGCGCCGAAGC------GGCCTGACCATCTCGTGCTCGGCCCCGCCGCCGGACAGGACCGCCCCGACCGCCTACAGTGCCGAGgttagtactctcgctttggcaagctccatccatgctgaatttactgatctttatggaagctgcttagatcttagttcgagacatttcgggctgtctaggt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29671600|gb|CB667875.1|CB667875
EST:     GCTTGGCCCCGCCGCCGGCCAGGGACGCCCCGACCGCCTCCAGTGCCAAG                         GACTAAAAGCTGTTAATAAGATTGGATTATCAAGTGAAAGAAATTATTCCA
genomic: GCTTGGCCCCGCCGCCGGCCAGGGACGCCCCGACCGCCTCCAGTGCCAAGgttttcttct ... tttttctcagGACTAAAAGCTGTTAATAAGATTGGATTATCAAGTGAAAGAAATTATTCCA