1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGGGCGGGCTCGTCGTCGGCGCAGCAGGGGCATCCGACGATGGAGTGGCGGTTCGCGCAGGTCTTCGGCGAGCGCGCGGCCGGGGAGGACGTGCAGGAAGgtacgttgccttgccaccccctcgcccgcgagaggcctggcccgttgccccccaccccctcccgccgcctcgagatctggtcgattcgtgcggggttgtg...
species | Oryza sativa |
transcript | LOC_Os06g36770.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTTCGCGCAGGTCTTCGGCGAGCGCGCGGCCGGGGAGGACGTGCAGGAAG TTGACATCATCTCTGCAATTGAGTTTGATAAATCTGGTGATCATCTTGCCAEST: gi|88300529|gb|CI587333.1|CI587333
genomic: GTTCGCGCAGGTCTTCGGCGAGCGCGCGGCCGGGGAGGACGTGCAGGAAGgtacgttgcc ... tttgtttcagTTGACATCATCTCTGCAATTGAGTTTGATAAATCTGGTGATCATCTTGCCA
EST: GTTCGCGCAGGTCTTCGGCGAGCGCGCGGCCGGGGAGGACGTGCAGGAAG TTGACATCATCTCTGCAATTGAGTTTGATAAATCTGGTGATCATCTTGCCAEST: gi|66912787|gb|CX099635.1|CX099635
genomic: GTTCGCGCAGGTCTTCGGCGAGCGCGCGGCCGGGGAGGACGTGCAGGAAGgtacgttgcc ... tttgtttcagTTGACATCATCTCTGCAATTGAGTTTGATAAATCTGGTGATCATCTTGCCA
EST: GTTCGCGCAGGTCTTCGGCGAGCGCGCGGCCGGGGAGGACGTGCAGGAAG TTGACATCATCTCTGCAATTGAGTTTGATAAATCTGGTGATCATCTTGCCA
genomic: GTTCGCGCAGGTCTTCGGCGAGCGCGCGGCCGGGGAGGACGTGCAGGAAGgtacgttgcc ... tttgtttcagTTGACATCATCTCTGCAATTGAGTTTGATAAATCTGGTGATCATCTTGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGCGGGCTCGTCGTCGGCGCAGCAGGGGCATCCGACGATGGAGTGGCGGTTCGCGCAGGTCTTCGGCGAGCGCGCGGCCGGGGAGGACGTGCAGGAAGgtacgttgccttgccaccccctcgcccgcgagaggcctggcccgttgccccccaccccctcccgccgcctcgagatctggtcgattcgtgcggggttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcccgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctggccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgggg