1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGAGGGAGTGGCCCCGCCGCCGTCTTCTTGGCCGGAGATGGGCGACTCCGGCGGCTCCGTCGTGTCGGTGGACGTCGAGCGCATCTCCTTCGGCGGCAAGgttggtggtgctcctcccccttcttgatttgctcccctggaggcccgatttggttggacgcattggatggaggggagcgccggatgatgggagcttggtg...
species | Oryza sativa |
transcript | LOC_Os06g36740.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGGCTCCGTCGTGTCGGTGGACGTCGAGCGCATCTCCTTCGGCGGCAAG GAACATCATATACAAACAAACCATGGTTCTGTATCTGTTGCGGTGTATGGCEST: gi|29657096|gb|CB653371.1|CB653371
genomic: GCGGCTCCGTCGTGTCGGTGGACGTCGAGCGCATCTCCTTCGGCGGCAAGgttggtggtg ... ctttcttcagGAACATCATATACAAACAAACCATGGTTCTGTATCTGTTGCGGTGTATGGC
EST: GCGGCTCCGTCGTGTCGGTGGACGTCGAGCGCATCTCCTTCGGCGGCAAG GAACATCATATACAAACAAACCATGGTTCTGTATCTGTTGCGGTGTATGGCEST: gi|58684782|gb|CK073469.1|CK073469
genomic: GCGGCTCCGTCGTGTCGGTGGACGTCGAGCGCATCTCCTTCGGCGGCAAGgttggtggtg ... ctttcttcagGAACATCATATACAAACAAACCATGGTTCTGTATCTGTTGCGGTGTATGGC
EST: GCGGCTCCGTCGTGTCGGTGGACGTCGAGCGCATCTCCTTCGGCGGCAAG GAACATCATATACAAACAAACCATGGTTCTGTATCTGTTGCGGTGTATGGC
genomic: GCGGCTCCGTCGTGTCGGTGGACGTCGAGCGCATCTCCTTCGGCGGCAAGgttggtggtg ... ctttcttcagGAACATCATATACAAACAAACCATGGTTCTGTATCTGTTGCGGTGTATGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGGAGTGGCCCCGCCGCCGTCTTCTTGGCCGGAGATGGGCGACTCCGGCGGCTCCGTCGTGTCGGTGGACGTCGAGCGCATCTCCTTCGGCGGCAAGgttggtggtgctcctcccccttcttgatttgctcccctggaggcccgatttggttggacgcattggatggaggggagcgccggatgatgggagcttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcgccgg