1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AACTAAGACCGGAGTTAATTAGCACCCCTGTGGCTACCATCGATCTGTCTAAAGAGTGATTAGATCGAGATGACCATCACCATTGAGCAGCCTCACCTTGgtgagctcatgatccttttctctctctctcttgatttcttgattccagtccgtgaggaagaaaaggttcagcaatgttcctggatggatggatggatcgtggaactaattaaggttctaagttctgacatggttcgcttgcag
species | Oryza sativa |
transcript | LOC_Os06g36560.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAAGAGTGATTAGATCGAGATGACCATCACCATTGAGCAGCCTCACCTTG ATGCTATCGCCGACCGGAAGGTCGCCGGCGGCGGCGGTGGCGACAACGCGGEST: gi|38475187|gb|CF959320.1|CF959320
genomic: AAAGAGTGATTAGATCGAGATGACCATCACCATTGAGCAGCCTCACCTTGgtgagctcat ... tcgcttgcagATGCTATCGCCGACCGGAAGGTCGCCGGCGGCGGCGGCGGCGACAACGCGG
EST: AAAGAGTGATTAGATCGAGATGACCATCACCATTGAGCAGCCTCACCTTG ATGCTATCGCCGACCGGAAGGTCACCAGCGGCGGCGGCGGCGACAACGCGGEST: gi|86851034|gb|CI311252.1|CI311252
genomic: AAAGAGTGATTAGATCGAGATGACCATCACCATTGAGCAGCCTCACCTTGgtgagctcat ... tcgcttgcagATGCTATCGCCGACCGGAAGGTCGCCGGCGGCGGCGGCGGCGACAACGCGG
EST: AAAGAGTGATTAGATCGAGATGACCATCACCATTGAGCAGCCTCACCTTG ATGCTATCGCCGACCGGAAGGTCGCCGGCGGCGGCGGCG---ACAACGCGGEST: gi|88353796|gb|CI634587.1|CI634587
genomic: AAAGAGTGATTAGATCGAGATGACCATCACCATTGAGCAGCCTCACCTTGgtgagctcat ... tcgcttgcagATGCTATCGCCGACCGGAAGGTCGCCGGCGGCGGCGGCGGCGACAACGCGG
EST: AAAGAGTGATTAGATCGAGATGACCATCACCATTGAGCAGCCTCACCTTG ATGCTATCGCCGACCGGAAGGTCGCCGGCGGNGGCGGCGGCGACAACGCGGEST: gi|58670144|gb|CK058830.1|CK058830
genomic: AAAGAGTGATTAGATCGAGATGACCATCACCATTGAGCAGCCTCACCTTGgtgagctcat ... tcgcttgcagATGCTATCGCCGACCGGAAGGTCGCCGGCGGCGGCGGCGGCGACAACGCGG
EST: AAAGAGTGATTAGATCGAGATGACCATCACCATTGAGCAGCCTCACCTTG ATGCTATCGCCGACCGGAAGGTCACCAGCGGCGGCGGCGGCGACAACGCGGEST: gi|86904915|gb|CI310708.1|CI310708
genomic: AAAGAGTGATTAGATCGAGATGACCATCACCATTGAGCAGCCTCACCTTGgtgagctcat ... tcgcttgcagATGCTATCGCCGACCGGAAGGTCGCCGGCGGCGGCGGCGGCGACAACGCGG
EST: AAAGAGTGATTAGATCGAGATGACCATCACCATTGAGCAGCCTCACCTTG ATGCTATCGCCGACCGGAAGGTCGCCGGCGGCGGCGGCGG
genomic: AAAGAGTGATTAGATCGAGATGACCATCACCATTGAGCAGCCTCACCTTGgtgagctcat ... tcgcttgcagATGCTATCGCCGACCGGAAGGTCGCCGGCGGCGGCGGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTAAGACCGGAGTTAATTAGCACCCCTGTGGCTACCATCGATCTGTCTAAAGAGTGATTAGATCGAGATGACCATCACCATTGAGCAGCCTCACCTTGgtgagctcatgatccttttctctctctctcttgatttcttgattccagtccgtgaggaagaaaaggttcagcaatgttcctggatggatggatggatcgtggaactaattaaggttctaagttctgacatggttcgcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG