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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGCAGCGTCCCGGCCGCGGCGAGGCCATCGACCCAGTCGGCTTCCTCGCCAAGCACGGCATCTCCGACCGCGCGTTCGCGCAGTTCCTCCGTGACCGgtacgttctccgagcgtctcgtatggcagggtgcaacctccggtttcccctctgctaaattcgttctaactggtcgactgatgccttgactgggtgtttg...

Basic information

species Oryza sativa
transcript LOC_Os06g26234.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29629381|gb|CB634390.1|CB634390
EST:     GCCAAGCACGGCATCTCCGACCGCGCGTTCGCGCAGTTCCTCCGTGACCG                         GTACAAAGCTTTGAAAGACCGTCGATGGGAGCTGCACTCTCGTCTAATTGA
genomic: GCCAAGCACGGCATCTCCGACCGCGCGTTCGCGCAGTTCCTCCGTGACCGgtacgttctc ... ttattattagGTACAAAGCTTTGAAAGACCGTCGATGGGAGCTGCACTCTCGTCTAATTGA
EST: gi|88434217|gb|CI589282.1|CI589282
EST:     GCCAAGCACGGCATCTCCGACCGCGCGTTCGCGCAGTTCCTCCGTGACCG                         GTACAAAGCTTTGAAAGACCGTCGATGGGAGCTGCACTCTCGTCTAATTGA
genomic: GCCAAGCACGGCATCTCCGACCGCGCGTTCGCGCAGTTCCTCCGTGACCGgtacgttctc ... ttattattagGTACAAAGCTTTGAAAGACCGTCGATGGGAGCTGCACTCTCGTCTAATTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGACGCAGCGTCCCGGCCGCGGCGAGGCCATCGACCCAGTCGGCTTCCTCGCCAAGCACGGCATCTCCGACCGCGCGTTCGCGCAGTTCCTCCGTGACCGgtacgttctccgagcgtctcgtatggcagggtgcaacctccggtttcccctctgctaaattcgttctaactggtcgactgatgccttgactgggtgtttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcccctc