Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTCTGCGCCTACGCCACCACCTCCGGGCGCGTCACCATGTCCGCCGAGTGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaagcgttcgacgacgacgacacgtcttcgccggcgtgcgtccgtggcgagcgagagactgacaaagctaggatttgccatgcgtgcgtgcag

Basic information

species Oryza sativa
transcript LOC_Os06g21590.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g21590.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G092311_T02 (Zea mays), 5'ss of exon 1
CGGTCTGCGCCTACGCCACCACCTCCGGGCGCGTCACCATGTCCGCCGAGTGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaagcgttcgacgacgacgacacgtcttcgccggcgtgcgtccgtggcgagcgagagactgacaaagctaggatttgccatgcgt--gcgtgcag
|| |||||||| ||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||  |||    |  | | |     || ||       || | | |   |||| ||      ||  |          | || |  | ||   | | |||
CGTTCTGCGCCAACGCCACCACCTCTGGCCGCGTCACCATGTCCGCGGAGTGGATGCCCGGCCAGCCACGCCCTGCCCACCTCGACGGCTCCTCTCCCGGgtaagca--agcagaagcaggctagctagcgactg----atcgagtgacaacggcgtgctctgctctccctgtctc----tctgacgagtgttgacatacag

upper sequence: LOC_Os06g21590.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G036880_T01 (Zea mays), 5'ss of exon 1
CGGTCTGCGCCTACGCCACCACCTCCGGGCGCGTCACCATGTCCGCCGAGTGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagca-----caagcgt--tcgacgacgacgacacgtcttcgccggcgtgcgtccgtggcgagcgagagactgacaaagctaggatttgc-catgcgtgcgtgcag
|| |||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||| || |||||||||     | ||| |   |   |||||||       | |    |     |||  |  | |  | |      |  |       || |    |      |   |||
CGTTCTGCGCCCACGCCACCACCTCCGGCCGCGTCACCATGTCCGCGGAGTGGATGCCCGGGCAGCCCCGCCCCGCCCACCTCGACGGCTCCTCGCCAGGgtaagcaagctactagcctagccagtgacgacgcataacgtacaatcgtacatgtctttttctactgtgcatgcaatgatatatatatatatatacaaacacacacag

upper sequence: LOC_Os06g21590.1 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv13s0019g04140.t01 (Vitis vinifera), 5'ss of exon 1
CGGTCTGCGCCTACGCCACCACCTCCGGGCGCGTCACCATGTCCGCCGAGTGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaagcgttcga-cgacgacgacacgtcttcgccggcgtgcgtccgtggcgagcgagagactgacaaagctaggatttgccatgcgtgcgtgcag
|  ||  |      ||| ||  ||| |  || ||||||||||| ||||| |||||||| |||||||| |||||  || |||| || |||||| | || ||||||| | ||  | || |  |      |    |||| |  |  ||   ||      ||   | |   ||    |  |  |   ||   |  |||  | |||
CACTCCCCAATGCTGCCGCCGGCTCTGCCCGGGTCACCATGTCTGCCGACTGGATGCCCGGCCAGCCCCGCCCACCCTACCTTGATGGCTCCGCCCCTGGgtaagaataatggatcaagtgtttgatatttatctttgaagcagtagatcatgtttgatgaaaattttggtggatgtgtgtggtgtt-tatgtgttt-cag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29683490|gb|CB679765.1|CB679765
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29667355|gb|CB663630.1|CB663630
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|58687858|gb|CK076545.1|CK076545
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|33380838|gb|CF196181.1|CF196181
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCNN
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|700252|gb|D46543.1|D46543
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|55410170|gb|CV722546.1|CV722546
EST:     GCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: GCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|58690241|gb|CK078928.1|CK078928
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29683693|gb|CB679968.1|CB679968
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGTCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|58690462|gb|CK079149.1|CK079149
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29684870|gb|CB681145.1|CB681145
EST:     CCGGGCCAGCCACTCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGATCGACCCGCTGGGCCTCGCCACCGATGCCGGAGAACTTCG
genomic: CCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCG-TGCCGGAGAACTTCG
EST: gi|58610560|gb|CK038272.1|CK038272
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|58607807|gb|CK035840.1|CK035840
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|38468852|gb|CF952983.1|CF952983
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TAACTATCGGGTTCGACCCGCTAGGGCCTCGCCACCGTGCCGGAGAATTTC
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACT-TCGGGTTCGACCCGCT-GGGCCTCGCCACCGTGCCGGAGAACTTC
EST: gi|29683648|gb|CB679923.1|CB679923
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29646647|gb|CB651654.1|CB651654
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29666764|gb|CB663039.1|CB663039
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29667899|gb|CB664174.1|CB664174
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|58588919|gb|CF987227.1|CF987227
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAA-TTGCG
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTT-CG
EST: gi|58693846|gb|CK082533.1|CK082533
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|58612746|gb|CK040458.1|CK040458
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29684047|gb|CB680322.1|CB680322
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29661843|gb|CB658118.1|CB658118
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29682596|gb|CB678871.1|CB678871
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|38472413|gb|CF956544.1|CF956544
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|88324073|gb|CI563684.1|CI563684
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|58590566|gb|CF988874.1|CF988874
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29616832|gb|CB621844.1|CB621844
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|58610288|gb|CK038138.1|CK038138
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGGCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29689638|gb|CB685913.1|CB685913
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29669505|gb|CB665780.1|CB665780
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29683338|gb|CB679613.1|CB679613
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|58696253|gb|CK084940.1|CK084940
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|58587697|gb|CF986005.1|CF986005
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29687055|gb|CB683330.1|CB683330
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29689149|gb|CB685424.1|CB685424
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCTA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|38470468|gb|CF954599.1|CF954599
EST:     CGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: CGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29683307|gb|CB679582.1|CB679582
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|5005171|gb|AU070333.1|AU070333
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29689754|gb|CB686029.1|CB686029
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|58689051|gb|CK077738.1|CK077738
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|25777847|gb|CA752597.1|CA752597
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|34996381|gb|CF569126.1|CF569126
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29687879|gb|CB684154.1|CB684154
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29662969|gb|CB659244.1|CB659244
EST:     GCCGGGCCACCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: GCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|38482450|gb|CF966487.1|CF966487
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29686234|gb|CB682509.1|CB682509
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29681420|gb|CB677695.1|CB677695
EST:     TGGATGCCGGGCCATCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|58692564|gb|CK081251.1|CK081251
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29683287|gb|CB679562.1|CB679562
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|58691281|gb|CK079968.1|CK079968
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29663892|gb|CB660167.1|CB660167
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29664430|gb|CB660705.1|CB660705
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29664418|gb|CB660693.1|CB660693
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29684503|gb|CB680778.1|CB680778
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|58692882|gb|CK081569.1|CK081569
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29670237|gb|CB666512.1|CB666512
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|58592246|gb|CF990554.1|CF990554
EST:     TGGATGCCGGGCCAGCCACGCCCCGACCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|29684138|gb|CB680413.1|CB680413
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|58692169|gb|CK080856.1|CK080856
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA
EST: gi|58688427|gb|CK077114.1|CK077114
EST:     TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGG                         TGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAATTTCGA
genomic: TGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaa ... gtgcgtgcagTGACTTCGGGTTCGACCCGCTGGGCCTCGCCACCGTGCCGGAGAACTTCGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGTCTGCGCCTACGCCACCACCTCCGGGCGCGTCACCATGTCCGCCGAGTGGATGCCGGGCCAGCCACGCCCCGCCCACCTCGACGGCTCCTCTCCCGGgtaagcacaagcgttcgacgacgacgacacgtcttcgccggcgtgcgtccgtggcgagcgagagactgacaaagctaggatttgccatgcgtgcgtgcag

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