1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGAGGAGGGGGCTCGTGCTCGTCTGTCGCTGGGTGTGTCGGGGGCGCCGCGGATCACTCTGCCTCGAGCTGCGCGCTCGCATTCCGCTCCTTCGATCTGGgtgagttttttttttttttggggtgtgctttgacgcttgtgccgtctcgtcgtcgtgggcggcggcggtgcggctgctggatggattgatggatggatgc...
species | Oryza sativa |
transcript | LOC_Os06g20370.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CATTCCGCTCCTTCGATCTGG GTTCATCTGTTCTGAGATGGCTGGCGACATTACGTGTGGATCCTTGCTGCAEST: gi|58670209|gb|CK058895.1|CK058895
genomic: CATTCCGCTCCTTCGATCTGGgtgagttttt ... ttcctgacagGTTCATCTGTTCTGAGATGGCTGGCGACATTACGTGTGGATCCTTGCTGCA
EST: GGATCACTCTGCCTCGAGCTGCGCGGTCGCATTCCGCTCCTTCGATCTGG GTTCATCTGTTCTGAGATGGCTGGCGACATTACGTGTGGATCCTTGCTGCA
genomic: GGATCACTCTGCCTCGAGCTGCGCGCTCGCATTCCGCTCCTTCGATCTGGgtgagttttt ... ttcctgacagGTTCATCTGTTCTGAGATGGCTGGCGACATTACGTGTGGATCCTTGCTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGAGGGGGCTCGTGCTCGTCTGTCGCTGGGTGTGTCGGGGGCGCCGCGGATCACTCTGCCTCGAGCTGCGCGCTCGCATTCCGCTCCTTCGATCTGGgtgagttttttttttttttggggtgtgctttgacgcttgtgccgtctcgtcgtcgtgggcggcggcggtgcggctgctggatggattgatggatggatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtcgtcg
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcggctg