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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCGCCGAGGTGGGAGAAGGCGACGTCGCCGACATGAAGCTGTTCGTGAAGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatcccttcccccttcccccctctccttctctctcccccaatccgcgcgatttcgagggaattctccgggaatccgctcgattcggggggcgtttg...

Basic information

species Oryza sativa
transcript LOC_Os06g15360.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g15360.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G035417_T01 (Zea mays), 5'ss of exon 1
TATCGCCGAGGTGGGAGA---AGGCGACGTCGC-CGACATGAAGCTGTTCGTGAAGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatcccttcccccttcccccctctccttctctctcccccaatccgcgcgatttcgagggaattctccgggaatccgctcgattcggggggcgtttg---
    |  ||| |    ||   ||||| |||||  ||| ||||||||   ||| |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||  ||| | ||| | |  | | ||   ||  ||    | | |||| || ||||        ||| | ||      |  ||  ||||   |  || |   
----GGAGAGTTCAAGGACCGAGGCGGCGTCGGGCGAGATGAAGCTTAACGTCAAGACCCTCAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGATGCATCGgtacggcccccttcccgtccttctcact---tcaatccgatcgattccgtgcaatttttgaccgtttccctggattcgggtgcggctcggtacgatttcgcgg

upper sequence: LOC_Os06g15360.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G035417_T02 (Zea mays), 5'ss of exon 1
TATCGCCGAGGTGGGAGAAGGCGACGTCGCCGACATGAAGCTGTTCGTGAAGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatcccttcccccttcccccctctccttctctctcccccaatccgcgcgatttcgagggaattctccgggaatccgctcgattcggggggcgtttg---
                                  ||||||||   ||| |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||  ||| | ||| | |  | | ||   ||  ||    | | |||| || ||||        ||| | ||      |  ||  ||||   |  || |   
----------------------------------ATGAAGCTTAACGTCAAGACCCTCAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGATGCATCGgtacggcccccttcccgtccttctcact---tcaatccgatcgattccgtgcaatttttgaccgtttccctggattcgggtgcggctcggtacgatttcgcgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29629490|gb|CB634499.1|CB634499
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|58665658|gb|CK054344.1|CK054344
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88305062|gb|CI651993.1|CI651993
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88692049|gb|CI735624.1|CI735624
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|86902607|gb|CI306410.1|CI306410
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|428582|gb|D24734.1|D24734
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88735625|gb|CI759133.1|CI759133
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|33687245|gb|CF315484.1|CF315484
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|2428184|gb|C72647.1|C72647
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|86847636|gb|CI288743.1|CI288743
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|29643232|gb|CB648239.1|CB648239
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|58598650|gb|CK009178.1|CK009178
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|33689698|gb|CF317937.1|CF317937
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88364556|gb|CI612371.1|CI612371
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|33656015|gb|CF278629.1|CF278629
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88371129|gb|CI597606.1|CI597606
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88351910|gb|CI625910.1|CI625910
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|58670896|gb|CK059582.1|CK059582
EST:     CGAGGCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: CGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88669853|gb|CI723969.1|CI723969
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88726457|gb|CI750112.1|CI750112
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|86850325|gb|CI305564.1|CI305564
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|29631166|gb|CB636175.1|CB636175
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|29669284|gb|CB665559.1|CB665559
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|29636049|gb|CB641058.1|CB641058
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|29673854|gb|CB670129.1|CB670129
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|218502296|gb|FG962509.1|FG962509
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGTGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88456164|gb|CI567804.1|CI567804
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88356431|gb|CI652868.1|CI652868
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|86888643|gb|CI305711.1|CI305711
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88396328|gb|CI598440.1|CI598440
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|58586179|gb|CF984487.1|CF984487
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCGGGGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88973572|gb|CI718000.1|CI718000
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88331149|gb|CI639560.1|CI639560
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88430972|gb|CI571962.1|CI571962
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88402664|gb|CI598891.1|CI598891
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88316471|gb|CI621710.1|CI621710
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|86851128|gb|CI311346.1|CI311346
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88694831|gb|CI738869.1|CI738869
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88348123|gb|CI637584.1|CI637584
EST:     AGAACCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTNG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|86848049|gb|CI290571.1|CI290571
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|86904514|gb|CI308724.1|CI308724
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88299070|gb|CI570040.1|CI570040
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|29657664|gb|CB653939.1|CB653939
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|117226238|gb|CT846174.1|CT846174
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88339739|gb|CI647603.1|CI647603
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|58611993|gb|CK039705.1|CK039705
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|568797|gb|D39646.1|D39646
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88720261|gb|CI743560.1|CI743560
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88745523|gb|CI768883.1|CI768883
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|29670071|gb|CB666346.1|CB666346
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|29668712|gb|CB664987.1|CB664987
EST:     AGACCCTGAAGGGCACCAACTTCTAGATCAAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88288630|gb|CI663419.1|CI663419
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|29658464|gb|CB654739.1|CB654739
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCC                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88426796|gb|CI584159.1|CI584159
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTAATCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|29632660|gb|CB637669.1|CB637669
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCATGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|29643186|gb|CB648193.1|CB648193
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAATAGAATCATTGAGAGTACTCATGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|29660320|gb|CB656595.1|CB656595
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|87016990|gb|CI286126.1|CI286126
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88401057|gb|CI685040.1|CI685040
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88336977|gb|CI627057.1|CI627057
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88827334|gb|CI777899.1|CI777899
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88578252|gb|CI687172.1|CI687172
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88299699|gb|CI577201.1|CI577201
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|29631164|gb|CB636173.1|CB636173
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88363922|gb|CI607232.1|CI607232
EST:     GACCCTGAAGGGCACCAACCTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: GACCCTGAAGGGCACCAAC-TTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|86902307|gb|CI302338.1|CI302338
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|58667186|gb|CK055872.1|CK055872
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|88387585|gb|CI585288.1|CI585288
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
EST: gi|568864|gb|D39713.1|D39713
EST:     AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG                         GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC
genomic: AGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatccc ... tgttttgcagGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATCGCCGAGGTGGGAGAAGGCGACGTCGCCGACATGAAGCTGTTCGTGAAGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCGgtacgatcccttcccccttcccccctctccttctctctcccccaatccgcgcgatttcgagggaattctccgggaatccgctcgattcggggggcgtttg

- - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC