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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCTGTTCTTCGAGGGCCAGCGCTCCGGCCGCCTGCCACCCGACCAGCGCCTCCGCTGGCGCCGTGACTCCGCCCTCAACGACGGCGCCACCGCCGGCgtacggaccaccaccgctctctctctctctctgttctagcattaatgcggtttgcaatgtagtagtaatgatgacgatgtcgctgacggtttcttggaatggtggcgtggcgtggcgtggcag

Basic information

species Oryza sativa
transcript LOC_Os06g14540.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g14540.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA08G04840.1 (Glycine max), 5'ss of exon 1
CATCCTGTTCTTCGAGGGCCAGCGCTCCGGCCGCCTGCCACCCGACCAGCGCCTCCGCTGGCGCCGTGACTCCGCCCTCAACGACGGCGCCACCGCCGGCgtacggaccaccaccgctctctctctctctctgttctagcattaatgcggtttgcaatgtagtagtaatgatgacgatgtcgctgacggtttcttggaatggtggcgtggcgtggcgtggcag
||| || |||||||| |||||||||||||||   || ||  ||||||||||||||||||||||||  ||||| ||  |  ||||||||||||||||||| ||| |                | |||   |||||| |      ||||  | |||  |   | || | |||||||   |   |  |  ||    |||   || |  |   |             
CATTCTCTTCTTCGAAGGCCAGCGCTCCGGCAAACTCCCCGCCGACCAGCGCCTCCGCTGGCGCCACGACTCTGCATTGCACGACGGCGCCACCGCCGGAgtaag----------------tttcttgttctgttatga---aaatgtagattgatagagaata-tgatgatgat--taatgaggtaggcacattgtgttgtttactcag-------------

upper sequence: LOC_Os06g14540.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA05G34850.1 (Glycine max), 5'ss of exon 1
CATCCTGTTCTTCGAGGGCCAGCGCTCCGGCCGCCTGCCACCCGACCAGCGCCTCCGCTGGCGCCGTGACTCCGCCCTCAACGACGGCGCCACCGCCGGCgtacggaccaccaccgctctctctctctctctgttctagcattaa-tgcggtttgcaatgtagtagtaatgatgacgatgtcgctgacggtttcttggaatggtggcgtggcgtggcgtggcag
||| || |||||||| |||||||||||||||   || ||  ||||||||||||||||||||||||  ||||| ||  |  ||||||||||||||||||| ||| |            | ||| | |   ||||     | | ||  |   |      ||| | || | | | ||   |  | | ||    |||||  |                          
CATTCTCTTCTTCGAAGGCCAGCGCTCCGGCAAACTCCCCGCCGACCAGCGCCTCCGCTGGCGCCACGACTCTGCATTGCACGACGGCGCCACCGCCGGAgtaagt----------ttttctgttttgttctgaaagggtaataggtagagaaaatgatg-attaatgaggttggt-acattg-tgtttttttctcag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58686981|gb|CK075668.1|CK075668
EST:     GCCTCCGCTGGCGCCGTGACTCCGCCCTCAACGACGGCGCCACCGCCGGC                         GTGGACCTGACGGGAGGGTACTACGACGCCGGCGACAACGTGAAGTTCGGG
genomic: GCCTCCGCTGGCGCCGTGACTCCGCCCTCAACGACGGCGCCACCGCCGGCgtacggacca ... ggcgtggcagGTGGACCTGACGGGAGGGTACTACGACGCCGGCGACAACGTGAAGTTCGGG
EST: gi|58672594|gb|CK061280.1|CK061280
EST:     GCCTCCGCTGGCGCCGTGACTCCGCCCTCAACGACGGCGCCACCGCCGGC                         GTGGACCTGACGGGAGGGTACTACGACGCCGGCGACAACGTGAAGTTCGGG
genomic: GCCTCCGCTGGCGCCGTGACTCCGCCCTCAACGACGGCGCCACCGCCGGCgtacggacca ... ggcgtggcagGTGGACCTGACGGGAGGGTACTACGACGCCGGCGACAACGTGAAGTTCGGG
EST: gi|58670346|gb|CK059032.1|CK059032
EST:     GCCTCCGCTGGCGCCGTGACTCCGCCCTCAACGACGGCGCCACCGCCGGC                         GTGGACCTGACGGGAGGGTACTACGACGCCGGCGACAACGTGAAGTTCGGG
genomic: GCCTCCGCTGGCGCCGTGACTCCGCCCTCAACGACGGCGCCACCGCCGGCgtacggacca ... ggcgtggcagGTGGACCTGACGGGAGGGTACTACGACGCCGGCGACAACGTGAAGTTCGGG
EST: gi|58656909|gb|CK045589.1|CK045589
EST:     GCCTCCGCTGGCGCCGTGACTCCGCCCTCAACGACGGCGCCACCGCCGGC                         GTGGACCTGACGGCAGGGTACTACGACGCCGGCGACAACGTGAAGTTCGGG
genomic: GCCTCCGCTGGCGCCGTGACTCCGCCCTCAACGACGGCGCCACCGCCGGCgtacggacca ... ggcgtggcagGTGGACCTGACGGGAGGGTACTACGACGCCGGCGACAACGTGAAGTTCGGG
EST: gi|58652631|gb|CK041311.1|CK041311
EST:     CCTCCGCTGTGCGCCGTGACTCCGCCCTCAACGACGGCGCCACCGCCGGC                         GTGGACCTGACGGGAGGGTACTACGACGCCGGCGACAACGTGAAGTTCGGG
genomic: CCTCCGCTG-GCGCCGTGACTCCGCCCTCAACGACGGCGCCACCGCCGGCgtacggacca ... ggcgtggcagGTGGACCTGACGGGAGGGTACTACGACGCCGGCGACAACGTGAAGTTCGGG