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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCTGCCCTCCCTACATCGTCTACGTTGACCACCGCCACAAGGAGGTCGTCCTCGCCATCCGCGGCCTCAACCTCACCCGCAACGCCGACTACAAGGTCgtccgcaagcgattccccttcccccgatcgacccgaatgccatgaacggcggcgagatttggagagggaggctgactcggctcgatcccccctgcag

Basic information

species Oryza sativa
transcript LOC_Os06g14490.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g14490.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G174315_T01 (Zea mays), 5'ss of exon 1
---CACCTGCCCTCCCTACATCGTCTACGTTGACCACCGCCACAAGGAGGTCGTCCTCGCCATCCGCGGCCTCAACCTCACCCGCAACGCCGACTACAAGGTCgtccgcaagcgattcc-----ccttcccccgatcgacc--cgaatg------ccatgaacggcggcgagatttggagagggaggctgactcggctcgatcccccctgcag
   | | ||||| || ||| |||||||||| ||| |    ||||||||| || |||||||| | |||||||||||||||   |||||||||||||||||||| | | ||   |  ||||     ||  | | ||| | | |  |||  |      || |     ||||      || ||  ||  | |   | || | |||   || | ||||
CAACGCGTGCCCGCCGTACCTCGTCTACGTCGACGAGGCGCACAAGGAGATCATCCTCGCCGTGCGCGGCCTCAACCTCGTGCGCAACGCCGACTACAAGgt-gcctgccttccgttccgtcgtccagctcgcgagcaatcggcgatcggccgtcccgtcgtgagcgggagaggtttgacgggttgtcgctcgcgtcacgaattcctccgcag