1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GCGCCGCCGCCGTCTCCGCCGCCGGGAGGACCGTCGAGGGGCTCGCCGTCGCCGGCGACGGCCGACTCCTCTGGGTCGAGACGCGCCCCGAGGAGGGAGGgtacgcgacgcgcgccgacgccatccacccccttctcgcgtggtcagattgctctcctgatgctgcattttttcttcttcttcag
species | Oryza sativa |
transcript | LOC_Os06g11190.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGGCGACGGCCGACTCCTCTGGGTCGAGACGCGCCCCGAGGAGGGAGG ACGAGCGGTCCTAGTGAAGGAAGCGGCGGAGCCGGGCGGCGATGCCGTGGAEST: gi|88411059|gb|CI606278.1|CI606278
genomic: GCCGGCGACGGCCGACTCCTCTGGGTCGAGACGCGCCCCGAGGAGGGAGGgtacgcgacg ... tcttcttcagACGAGCGGTCCTAGTGAAGGAAGCGGCGGAGCCGGGCGGCGATGCCGTGGA
EST: GCCGGCGACGGCCGACTCCTCTGGGTCGAGACGCGCCCCGACGAGGGAGG ACGATCGGTC-TACTGAAGGAAGCGGCGGAGCCGGGCGGT-ATGCCGTGEST: gi|29625692|gb|CB630703.1|CB630703
genomic: GCCGGCGACGGCCGACTCCTCTGGGTCGAGACGCGCCCCGAGGAGGGAGGgtacgcgacg ... tcttcttcagACGAGCGGTCCTAGTGAAGGAAGCGGCGGAGCCGGGCGGCGATGCCGTG
EST: GCCGGCGACGGCCGACTCCTCTGGGTCGAGACGCGCCCCGAGGAGGGAGG ACGAGCGGTCCTAGTGAAGGAAGCGGCGGAGCCGGGCGGCGATGCCGTGGAEST: gi|88392878|gb|CI614760.1|CI614760
genomic: GCCGGCGACGGCCGACTCCTCTGGGTCGAGACGCGCCCCGAGGAGGGAGGgtacgcgacg ... tcttcttcagACGAGCGGTCCTAGTGAAGGAAGCGGCGGAGCCGGGCGGCGATGCCGTGGA
EST: GCCGGCGACGGCCGACTCCTCTGGGTCGAGACGCGCCCCGAGGAGGGAGG AAGAGCGGTCCTAGTGAAGGAAGCGGCGGAGCCGGGCGGCGATGCCGTGGAEST: gi|29629332|gb|CB634343.1|CB634343
genomic: GCCGGCGACGGCCGACTCCTCTGGGTCGAGACGCGCCCCGAGGAGGGAGGgtacgcgacg ... tcttcttcagACGAGCGGTCCTAGTGAAGGAAGCGGCGGAGCCGGGCGGCGATGCCGTGGA
EST: GCCGGCGACGGCCGACTCCTCTGGGTCGAGACGCGCCCCGAGGAGGGAGG ACGAGCGGTCCTAGTGAAGGAAGCGGCGGAGCCGGGCGGCGATGCCGTGGAEST: gi|66923846|gb|CX110694.1|CX110694
genomic: GCCGGCGACGGCCGACTCCTCTGGGTCGAGACGCGCCCCGAGGAGGGAGGgtacgcgacg ... tcttcttcagACGAGCGGTCCTAGTGAAGGAAGCGGCGGAGCCGGGCGGCGATGCCGTGGA
EST: GCCGGCGACGGCCGACTCCTCTGGGTCGAGACGCGCCCCGAGGAGGGAGG ACGAGCGGTCCTAGTGAAGGAAGCGGCGGAGCCGGGCGGCGATGCCGTGGA
genomic: GCCGGCGACGGCCGACTCCTCTGGGTCGAGACGCGCCCCGAGGAGGGAGGgtacgcgacg ... tcttcttcagACGAGCGGTCCTAGTGAAGGAAGCGGCGGAGCCGGGCGGCGATGCCGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCCGCCGCCGTCTCCGCCGCCGGGAGGACCGTCGAGGGGCTCGCCGTCGCCGGCGACGGCCGACTCCTCTGGGTCGAGACGCGCCCCGAGGAGGGAGGgtacgcgacgcgcgccgacgccatccacccccttctcgcgtggtcagattgctctcctgatgctgcattttttcttcttcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG