Sequence
atgc intronic sequence ATGC exonic sequenceGCAGCTCCTCGAGCAGATGCGCCTCCACATGGCCACCGACGCCGGCAAGGACATCGCCAAGAAGGTCGGCCTCGTCTACCAGTTCAACATCGCCCCCAAGgtcaatatctccttctatccccttttaattgggtggaattgaagcgccccccgtcttgatcctgtttagtggcgcgcctttcgcag
Basic information
species | Oryza sativa |
transcript | LOC_Os06g10890.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os06g10890.2 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv18s0001g10520.t01 (Vitis vinifera), 5'ss of exon 1
-GCAGCTCCTCGAGCAGATGCGCCTCCACATGGCCACCGACGCCGGCAAGGACATCGCCAAGAAGGTCGGCCTCGTCTACCAGTTCAACATCGCCCCCAAGgtcaatatctccttctatccccttttaattgggtggaattgaagcgccccccgtcttgatcctgtttagtggcgcgcctttcgcag--------
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CGCCG-TGTTGGAGCAGATGAAGCTCCACCTTGCCACCGACGCCGGTAAACAACTCACCAAGAAGATCGGCCTCGTCTATCAGATCAACATCGCCCCTAAGgtccctctctctctctctctccctctgtttccttgtgtatagacgtatttttatcctaatcctaat--gtaatacttttgttgccggatcgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88483470|gb|CI420741.1|CI420741EST: ACATCGCCAAGAAGGTCGGCCTCGTCTACCAGTTCAACATCGCCCCCAAG AAAATCGGAGTCGACGAGGAGATCTTCGTCGTCGACCTCAAGAAGGGCGAG
genomic: ACATCGCCAAGAAGGTCGGCCTCGTCTACCAGTTCAACATCGCCCCCAAGgtcaatatct ... cctttcgcagAAAATCGGAGTCGACGAGGAGATCTTCGTCGTCGACCTCAAGAAGGGCGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAGCTCCTCGAGCAGATGCGCCTCCACATGGCCACCGACGCCGGCAAGGACATCGCCAAGAAGGTCGGCCTCGTCTACCAGTTCAACATCGCCCCCAAGgtcaatatctccttctatccccttttaattgggtggaattgaagcgccccccgtcttgatcctgtttagtggcgcgcctttcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG