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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGACTACTGGCGGCTCCCCGCCGGCGCCACGCTCAAGGACGTTGTCATCGTCCGCGCCGACGAGGCGCACCACCGCGACGTCAACCATTTCGCATCGgtacgtgcgtgcgtgtgaattcccaagcttgatgtgtgctttgtgtaggtttgtgatgactgaattatttttacttgtgatgtgcatgcag

Basic information

species Oryza sativa
transcript LOC_Os06g07570.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g07570.1 (Oryza sativa), 5'ss of exon 1
lower sequence: AC233960.1_FGT002 (Zea mays), 5'ss of exon 3
CATTGACTACTGGCGGCTCCCCGCCGGCGCCACGCTCAAGGACGT---TGTCATCGTCCGCGCCGACGAGGCGCACCACCGCGACGTCAACCATTTCGCATCGgtacgtgcgtgcgtgtg--aattcccaagcttgatgtgtgctttgtgtaggtttgtgatgactgaattatttttacttgtgatgtgcatgcag----------
    |||||||||| |||||| || |  || ||||||||||| ||   |||| | || ||| |||||||||||||||||||||||||||| || || || |||||| || |   |   ||  || |  |||  | |  |  || ||     | || |   ||| |    | |||   |    | || |  | |||           
---CGACTACTGGCAGCTCCCAGCTGATGCGACGCTCAAGGATGTGGTTGTCGTGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCGgtatgtccactcccttggcaagtatcaaa-tcgtagactgtttaaacgacgtattaaatgccccc-tcattcccaaa-ataatataaacgcatgtcttgtttt

upper sequence: LOC_Os06g07570.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ27318 (Selaginella moellendorffii), 5'ss of exon 3
CATTGACTACTGGCGGCTCCCCGCCGGCGCCACGCTCAAGGACGTTGTC---ATCGTCCGCGCCGACGAGGCGCACCACCGCGACGTCAACCATTTCGCATCGgtacgtgcgtgcgtgtgaattcccaagcttgatgtgtgctttgtgtaggtttgtgatgactgaattatttttacttgtgatgtgcatgcag
    ||||||||| |||| ||    | ||||| | ||   |||||||||    | ||||||||||||||||| |||||||| ||||| ||||| |||||| ||||| |  |  |  ||  |      |     |||| |   | |    || ||  | | | |                               
---CGACTACTGGAGGCTGCCAAAGGACGCCAAGATCCGCGACGTTGTCCAAGTTGTCCGCGCCGACGAGGCTCACCACCGGGACGTGAACCACTTCGCAGCGgtaagc-ctcggatgcaaga----agaagggatgggaattctaacgagtttgctcacgcccag----------------------------

upper sequence: LOC_Os06g07570.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ35306 (Selaginella moellendorffii), 5'ss of exon 3
CATTGACTACTGGCGGCTCCCCGCCGGCGCCACGCTCAAGGACGTTGTC---ATCGTCCGCGCCGACGAGGCGCACCACCGCGACGTCAACCATTTCGCATCGgtacgtgcgtgcgtgtgaattcccaagcttgatgtgtgctttgtgtaggtttgtgatgactgaattatttttacttgtgatgtgcatgcag
    ||||||||| |||| ||    | ||||| | ||   |||||||||    | ||||||||||||||||| |||||||| ||||| ||||| |||||| ||||| |  |  |  ||  ||     |     |||| | | | |    || ||  | | |                                 
---CGACTACTGGAGGCTGCCAAAGGACGCCAAGATCCGCGACGTTGTCCAAGTTGTCCGCGCCGACGAGGCTCACCACCGGGACGTGAACCACTTCGCAGCGgtaagc-ctcggatgcaaaa----agaagggatgggagttctaacgagtttgctcacgcgcag----------------------------