1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CGGCGGAGAATGCCGGGCCGACGTACCGGAACGTGCTGGCCAAGGACGCCGGGCTTCTGCGGCCGCCGCCGGGGGTCGAGAGCTGCTGGGACGTCTTCCGgtaggtgatcgcgcggtcttcatttctcagctccggcgatcgccggcggatggccggagacatgcagctccatttgtttttgtcattcatagcctgattcgatcggtttcttgaatcgtcttcggataattttgcag
species | Oryza sativa |
transcript | LOC_Os06g06350.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGGCTTCTGCGGCCGCCGCCGGGGGTCGAGAGCTGCTGGGACGTCTTCCG CAATTCGGTGGAGAAGTACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGTEST: gi|86903830|gb|CI302476.1|CI302476
genomic: GGGCTTCTGCGGCCGCCGCCGGGGGTCGAGAGCTGCTGGGACGTCTTCCGgtaggtgatc ... aattttgcagCAATTCGGTGGAGAAGTACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGT
EST: GGGCTTCTGCGGCCGCCGCCGGGGGTCGAGAGCTGCTGGGACGTCTTCCG CAATTCGGTGGAGAAGTACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGTEST: gi|88331869|gb|CI642094.1|CI642094
genomic: GGGCTTCTGCGGCCGCCGCCGGGGGTCGAGAGCTGCTGGGACGTCTTCCGgtaggtgatc ... aattttgcagCAATTCGGTGGAGAAGTACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGT
EST: GGGCTTCTGCGGCCGCCGCCGGGGGTCGAGAGCTGCTGGGACGTCTTCCG CAATTCGGTGGAGAAGTACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGTEST: gi|88342452|gb|CI645974.1|CI645974
genomic: GGGCTTCTGCGGCCGCCGCCGGGGGTCGAGAGCTGCTGGGACGTCTTCCGgtaggtgatc ... aattttgcagCAATTCGGTGGAGAAGTACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGT
EST: GGGCTTCTGCGGCCGCCGCCGGGGGTCGAGAGCTGCTGGGACGTCTTCCG CAATTCGGTGGAGAAGTACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGTEST: gi|88309327|gb|CI655335.1|CI655335
genomic: GGGCTTCTGCGGCCGCCGCCGGGGGTCGAGAGCTGCTGGGACGTCTTCCGgtaggtgatc ... aattttgcagCAATTCGGTGGAGAAGTACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGT
EST: GGGCTTCTGCGGCCGCCGCCGGGGGTCGAGAGCTGCTGGGACGTCTTCCG CAATTCGGTGGAGAAGTACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGTEST: gi|88325766|gb|CI648211.1|CI648211
genomic: GGGCTTCTGCGGCCGCCGCCGGGGGTCGAGAGCTGCTGGGACGTCTTCCGgtaggtgatc ... aattttgcagCAATTCGGTGGAGAAGTACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGT
EST: GGGCTTCTGCGGCCGCCGCCGGGGGTCGAGAGCTGCTGGGACGTCTTCCG CAATTCGGTGGAGAAGTACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGT
genomic: GGGCTTCTGCGGCCGCCGCCGGGGGTCGAGAGCTGCTGGGACGTCTTCCGgtaggtgatc ... aattttgcagCAATTCGGTGGAGAAGTACCCGGACAGCCCGATGCTCGGTCGCCGGAGAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGGAGAATGCCGGGCCGACGTACCGGAACGTGCTGGCCAAGGACGCCGGGCTTCTGCGGCCGCCGCCGGGGGTCGAGAGCTGCTGGGACGTCTTCCGgtaggtgatcgcgcggtcttcatttctcagctccggcgatcgccggcggatggccggagacatgcagctccatttgtttttgtcattcatagcctgattcgatcggtttcttgaatcgtcttcggataattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT