1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGGCCAAGGGCGGCAACGAGCAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGgtactctttccccctcttcaatccatccacatcaattcgattcgatttttagctatgtgcgtgcttcgtgtcgtggagatctggatcggatattcttctg...
species | Oryza sativa |
transcript | LOC_Os06g01700.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAG GAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGAEST: gi|88402391|gb|CI596252.1|CI596252
genomic: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGgtactctttc ... ctatgtccagGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGA
EST: CAGAAGTACTCCTCCCGCGACTTCGCCGCCCACACCACCCTCAAGCCCAG GAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGAEST: gi|86831590|gb|CI301440.1|CI301440
genomic: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGgtactctttc ... ctatgtccagGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGA
EST: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAG GAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGAEST: gi|88573290|gb|CI664861.1|CI664861
genomic: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGgtactctttc ... ctatgtccagGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGA
EST: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAG GAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGAEST: gi|88742245|gb|CI765753.1|CI765753
genomic: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGgtactctttc ... ctatgtccagGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGA
EST: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAG GAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGAEST: gi|88427649|gb|CI689512.1|CI689512
genomic: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGgtactctttc ... ctatgtccagGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGA
EST: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAG GAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGAEST: gi|86904323|gb|CI306741.1|CI306741
genomic: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGgtactctttc ... ctatgtccagGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGA
EST: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAG GAAAGAAGGACAACATACCCNAGAAGAGTTACAGAAGAGGAATCTCAGGGAEST: gi|88444118|gb|CI594491.1|CI594491
genomic: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGgtactctttc ... ctatgtccagGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGA
EST: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAG GAAAGAAGGACAATATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGAEST: gi|88743536|gb|CI767044.1|CI767044
genomic: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGgtactctttc ... ctatgtccagGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGA
EST: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAG GAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGAEST: gi|88301238|gb|CI594764.1|CI594764
genomic: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGgtactctttc ... ctatgtccagGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGA
EST: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAG GAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGAEST: gi|88402420|gb|CI596281.1|CI596281
genomic: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGgtactctttc ... ctatgtccagGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGA
EST: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAG GAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGAEST: gi|88377322|gb|CI600477.1|CI600477
genomic: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGgtactctttc ... ctatgtccagGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGA
EST: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAG GAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGAEST: gi|88339685|gb|CI660475.1|CI660475
genomic: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGgtactctttc ... ctatgtccagGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGA
EST: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAG GAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGAEST: gi|218478277|gb|FG948227.1|FG948227
genomic: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGgtactctttc ... ctatgtccagGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGA
EST: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAG GAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCCGGTAEST: gi|88342051|gb|CI644388.1|CI644388
genomic: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGgtactctttc ... ctatgtccagGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGA
EST: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAG GAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGgtactctttc ... ctatgtccagGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCCAAGGGCGGCAACGAGCAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGgtactctttccccctcttcaatccatccacatcaattcgattcgatttttagctatgtgcgtgcttcgtgtcgtggagatctggatcggatattcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccctc