1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACGACGGGGGAAGGAGGGTGAGGAAGCCCTACACCATCACCAAGTCGCGGGAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCTgtaagcatccatgcgccttcttctaactcttaactgctgccctgcctccatcttctgctacttctccatccaatttcatatgccgttttgcctgctgtat...
species | Oryza sativa |
transcript | LOC_Os06g01670.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCT GTTTGATCGTGATTGGAAAAAGATTGAAGCATATGTTGGCTCTAAGACTGTEST: gi|88409782|gb|CI571039.1|CI571039
genomic: GAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCTgtaagcatcc ... actataacagGTTTGATCGTGATTGGAAAAAGATTGAAGCATATGTTGGCTCTAAGACTGT
EST: GAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCT GTTTGATCGTGATTGGAAAAAGATTGAAGCATATGTTGGCTCTAAGACTGTEST: gi|33686829|gb|CF315068.1|CF315068
genomic: GAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCTgtaagcatcc ... actataacagGTTTGATCGTGATTGGAAAAAGATTGAAGCATATGTTGGCTCTAAGACTGT
EST: GAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCT GTTTGATCGTGATTGGAAAAAGATTGAAGCATATGTTGGCTCTAAGACTGTEST: gi|88591086|gb|CI707994.1|CI707994
genomic: GAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCTgtaagcatcc ... actataacagGTTTGATCGTGATTGGAAAAAGATTGAAGCATATGTTGGCTCTAAGACTGT
EST: GAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCT GTTTGATCGTGATTGGAAAAAGATTGAAGCATATGTTGGCTCTAAGACTGTEST: gi|88725670|gb|CI748929.1|CI748929
genomic: GAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCTgtaagcatcc ... actataacagGTTTGATCGTGATTGGAAAAAGATTGAAGCATATGTTGGCTCTAAGACTGT
EST: GAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCT GTTTGATCGTGATTGGAAAAAGATTGAAGCATATGTTGGCTCTAAGACTGTEST: gi|33674838|gb|CF303077.1|CF303077
genomic: GAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCTgtaagcatcc ... actataacagGTTTGATCGTGATTGGAAAAAGATTGAAGCATATGTTGGCTCTAAGACTGT
EST: GAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCT GTTTGATCGTGATTGGAAAAAGATTGAAGCATATGTTGGCTCTAAGACTGTEST: gi|117235846|gb|CT847813.1|CT847813
genomic: GAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCTgtaagcatcc ... actataacagGTTTGATCGTGATTGGAAAAAGATTGAAGCATATGTTGGCTCTAAGACTGT
EST: GAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCT GTTTGATCGTGATTGGAAAAAGATTGAAGCATATGTTGGCTCTAAGACTGTEST: gi|88742890|gb|CI766398.1|CI766398
genomic: GAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCTgtaagcatcc ... actataacagGTTTGATCGTGATTGGAAAAAGATTGAAGCATATGTTGGCTCTAAGACTG-
EST: GAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCT GTTTGATCGTGATTGGAAAAAGATTGAAGCATATGTTGGCTCTAAGACTGTEST: gi|29625024|gb|CB630035.1|CB630035
genomic: GAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCTgtaagcatcc ... actataacagGTTTGATCGTGATTGGAAAAAGATTGAAGCATATGTTGGCTCTAAGACTGT
EST: GAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCT GTTTGATCGTGATTGGAAAAAGATTGAAGCATATGTTGGCTCTAAGACTGT
genomic: GAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCTgtaagcatcc ... actataacagGTTTGATCGTGATTGGAAAAAGATTGAAGCATATGTTGGCTCTAAGACTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGACGGGGGAAGGAGGGTGAGGAAGCCCTACACCATCACCAAGTCGCGGGAGAGCTGGACCGACCCCGAGCACGACAAGTTCCTCGAGGCGCTGCAGCTgtaagcatccatgcgccttcttctaactcttaactgctgccctgcctccatcttctgctacttctccatccaatttcatatgccgttttgcctgctgtat
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctcc