1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GACATCTCCAAGGCCGCCCTCGTCTGGGCTCTCACGCACGTCGTCCAGCACGGCGACACCATCCTGCTCCTCGCCGTCATGCCGCCGCCGCACAACTCTGgtatacatgcccttcctcttcaacagctttgccaatttacgatgccatgcatttttatactgtatcatggagctctttggatttggtcttcatggatcaactttcactagttcaattatttcctctcgttttaatttcag
species | Oryza sativa |
transcript | LOC_Os05g51190.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGCCGCACAACTCTG GCAAGAAGTTCTGGGGCTTCCCGCTCTTTGCAGGGGGTTGTGCGAGCGCCCEST: gi|88338568|gb|CI645822.1|CI645822
genomic: CCGCCGCACAACTCTGgtatacatgc ... ttaatttcagGCAAGAAGTTCTGGGGCTTCCCGCTCTTTGCAGGGGGTTGTGCGAGCGCCC
EST: CGGCGACACCATCCTGCTCCTCGCCGTCATGCCGCCGCCGCACAACTCTG GCAAGAAGTTCTGGGGCTTCCCGCTCTTTGCAGGGGGTTGTGCGAGCGCCCEST: gi|38476078|gb|CF960211.1|CF960211
genomic: CGGCGACACCATCCTGCTCCTCGCCGTCATGCCGCCGCCGCACAACTCTGgtatacatgc ... ttaatttcagGCAAGAAGTTCTGGGGCTTCCCGCTCTTTGCAGGGGGTTGTGCGAGCGCCC
EST: CGGCGACACCATCCTGCTCCTCGCCGTCATGCCGCCGCCGCACAACTCTG GCAAGAAGTTCTGGGGCTTCCCGCTCTTTGCAGGGGGTTGTGCGAGCGCCCEST: gi|88314691|gb|CI606759.1|CI606759
genomic: CGGCGACACCATCCTGCTCCTCGCCGTCATGCCGCCGCCGCACAACTCTGgtatacatgc ... ttaatttcagGCAAGAAGTTCTGGGGCTTCCCGCTCTTTGCAGGGGGTTGTGCGAGCGCCC
EST: CGGCGACACCATCCTGCTCCTCGCCGTCATGCCGCCGCCGCACAACTCTG GCAAGAAGTTCTGGGGCTTCCCGCTCTTTGCAGGGGGTTGTGCGAGCGCCC
genomic: CGGCGACACCATCCTGCTCCTCGCCGTCATGCCGCCGCCGCACAACTCTGgtatacatgc ... ttaatttcagGCAAGAAGTTCTGGGGCTTCCCGCTCTTTGCAGGGGGTTGTGCGAGCGCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACATCTCCAAGGCCGCCCTCGTCTGGGCTCTCACGCACGTCGTCCAGCACGGCGACACCATCCTGCTCCTCGCCGTCATGCCGCCGCCGCACAACTCTGgtatacatgcccttcctcttcaacagctttgccaatttacgatgccatgcatttttatactgtatcatggagctctttggatttggtcttcatggatcaactttcactagttcaattatttcctctcgttttaatttcag
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