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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACCTGATCGAGCCGTTCCACCGGTTCGTCGGAGAAGACATGATGATCAGCCTCCGGTACCCGCTCAAGCGCAACACCGTCCCCATCTGGGCCGTCCCCgtacgcctccatctccctccatttcttgatttcagaaagaaaaaaactgtgccggatagtgcgatgtttcagttctgtactaaatcttgctctcgttgatggcgcag

Basic information

species Oryza sativa
transcript LOC_Os05g47660.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29687339|gb|CB683614.1|CB683614
EST:     GCCTCCGGTACCCGCTCAAGCGCAACACCGTCCCCATCTGGGCCGTCCCC                         ATATATGCTGTCGCTGGGCCGATGATCATCTTCATTGTGATATACATGAAG
genomic: GCCTCCGGTACCCGCTCAAGCGCAACACCGTCCCCATCTGGGCCGTCCCCgtacgcctcc ... gatggcgcagATATATGCTGTCGCTGGGCCGATGATCATCTTCATTGTGATATACATGAAG
EST: gi|25777854|gb|CA752604.1|CA752604
EST:     GCCTCCGGTACCCGCTCAAGCGCAACACCGTCCCCATCTGGGCCGTCCCC                         ATATATGCTGTCGCTGGGCCGATGATCATCTTCATTGTGATATACATGAAG
genomic: GCCTCCGGTACCCGCTCAAGCGCAACACCGTCCCCATCTGGGCCGTCCCCgtacgcctcc ... gatggcgcagATATATGCTGTCGCTGGGCCGATGATCATCTTCATTGTGATATACATGAAG