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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGGCGAGCAGGTTCGGGACGATCTGCGTCTTCTGCGGCAGCAACGCGGGGCGCCGCAGGGTGTTCGGCGACGCGGCGCTCGACCTCGGCCACGAGCTGgtacgcgtagataacgggcgggcgcgtggcgcggcgacggtcgagctgtctcgctcgccgccgccgccgccgccatcgtacttttccatccttggtttcacactttttttttcaggtgcgagccgtgagattcttctcctttttttgtttttcag

Basic information

species Oryza sativa
transcript LOC_Os05g46360.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g46360.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G021406_T01 (Zea mays), 5'ss of exon 1
CGCGGCGAGCAGGTTCGGGACGATCTGCGTCTTCTGCGGCAGCAACGCGGGGCGCCGCAGGGTGTTCGGCGACGCGGCGCTCGACCTCGGCCACGAGCTGgtacgcgtagataacgggcgggcgcgtggcgcggcgacggtcgagctgtctcgctcgccgccgccgccgccgccatcgtacttttccatccttggtttca-cactttttttttcaggtgcgagccgtgagattcttctcctttttttgtttttcag
 | | ||||||||||| | ||| ||||||||||||||||||||||||| || ||||||| ||||| || |||||| || ||||| |||||||||||||||||  | ||  |   ||  || ||| |  | | |  || ||||  |  |    ||||      || | |  ||||  |       |||  | |  | | |  ||||                                                   
GGTGCCGAGCAGGTTCCGCACGGTCTGCGTCTTCTGCGGCAGCAACGCCGGCCGCCGCAAGGTGTACGCCGACGCCGCCCTCGAGCTCGGCCACGAGCTGgtgagtgtgca---cgtacgtgcgggcagagggaggaaggtcagggagctcagctca-----gctgaccacgcccgcccgtccgtccgccatgcgctacggcactgcc------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38468858|gb|CF952989.1|CF952989
EST:     GGCGCCGCAGGGTGTTCGGCGACGCGGCGCTCGACCTCGGCCACGAGCTG                         GTGAGGCGGGGCGTCGATCTGGTCTACGGCGGCGGCAGCATCGGGCTGATG
genomic: GGCGCCGCAGGGTGTTCGGCGACGCGGCGCTCGACCTCGGCCACGAGCTGgtacgcgtag ... tgtttttcagGTGAGGCGGGGCGTCGATCTGGTCTACGGCGGCGGCAGCATCGGGCTGATG
EST: gi|58590993|gb|CF989301.1|CF989301
EST:     GGCGACGCGGCGCTCGACCTCGGCCACGAGCTG                         GTGAGGCGGGGCGTCGATCTGGTGT-GGGCGGCGGCAGCATCGGGCTGATG
genomic: GGCGACGCGGCGCTCGACCTCGGCCACGAGCTGgtacgcgtag ... tgtttttcagGTGAGGCGGGGCGTCGATCTGGTCTACGGCGGCGGCAGCATCGGGCTGATG
EST: gi|58592728|gb|CF991036.1|CF991036
EST:     GGCGCCGCAGGGTGTTCGGCGACGCGGCGCTCGACCTCGGCCACGAGCTG                         GTGAGGCGGGGCGTCGATCTGGTCTACGGCGGCGGCAGCATCGGGCTGATG
genomic: GGCGCCGCAGGGTGTTCGGCGACGCGGCGCTCGACCTCGGCCACGAGCTGgtacgcgtag ... tgtttttcagGTGAGGCGGGGCGTCGATCTGGTCTACGGCGGCGGCAGCATCGGGCTGATG