1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCGCCGCAGCCGCCGCCGCCTCCTCCTCCTCTCGCCATGGCCGCCGCTGCTCCCCCCGCGGGCCCCGGGCTCTACTCCGACATCGGCAAGAAGGCTAGAGgttcggggatgctgcgtcgttgctggttctttttgtggggtgtttttgtggttggggttttgtgattttgttgcccttttgcttggggttgtttcttggtttcttgggtgtttgctgacgctggttgttttttttttctggtgggatttgcag
species | Oryza sativa |
transcript | LOC_Os05g45950.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCCGCGGGCCCCGGGCTCTACTCCGACATCGGCAAGAAGGCTAGAG ATCTCCTGTATAGGGATTACCACACGGACCAGAAGTTCACGCTCACCACCTEST: gi|33797474|gb|CF324597.1|CF324597
genomic: CCCCGCGGGCCCCGGGCTCTACTCCGACATCGGCAAGAAGGCTAGAGgttcggggat ... ggatttgcagATCTCCTGTATAGGGATTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: CCGACATCGGCAAGAAGGCTAGAG ATCTCCTGTATAGGGATTACCACACGGACCAGAAGTTCACGCTCACCACCTEST: gi|313081113|gb|HO213699.1|HO213699
genomic: CCGACATCGGCAAGAAGGCTAGAGgttcggggat ... ggatttgcagATCTCCTGTATAGGGATTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: CGCGGGCCCCGGGCTCTACTCCGACATCGGCAAGAAGGCTAGAG ATCTCCTGTATAGGGATTACCACACGGACCAGAAGTTCACGCTCACCACCTEST: gi|58608189|gb|CK036222.1|CK036222
genomic: CGCGGGCCCCGGGCTCTACTCCGACATCGGCAAGAAGGCTAGAGgttcggggat ... ggatttgcagATCTCCTGTATAGGGATTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: TCCCCCCGCGGGCGCGGGGCTCTACTCCGACATCGGCAAGAAGGCTAGAG ATCTCCTGTATAGGGATTACCACACGGACCAGAAGTTCACGCTCACCACCTEST: gi|163927541|gb|EG710729.1|EG710729
genomic: TCCCCCCGCGGGCCCCGGGCTCTACTCCGACATCGGCAAGAAGGCTAGAGgttcggggat ... ggatttgcagATCTCCTGTATAGGGATTACCACACGGACCAGAAGTTCACGCTCACCACCT
EST: TCCCCCCGCGGGCCCCGGGCTCTACTCCGACATCGGCAAGAAGGCTAGAG ATCTCCTGTATAGGGATTACCACACGGACCAGAAGTTCACGCTCACCACCT
genomic: TCCCCCCGCGGGCCCCGGGCTCTACTCCGACATCGGCAAGAAGGCTAGAGgttcggggat ... ggatttgcagATCTCCTGTATAGGGATTACCACACGGACCAGAAGTTCACGCTCACCACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGCCGCAGCCGCCGCCGCCTCCTCCTCCTCTCGCCATGGCCGCCGCTGCTCCCCCCGCGGGCCCCGGGCTCTACTCCGACATCGGCAAGAAGGCTAGAGgttcggggatgctgcgtcgttgctggttctttttgtggggtgtttttgtggttggggttttgtgattttgttgcccttttgcttggggttgtttcttggtttcttgggtgtttgctgacgctggttgttttttttttctggtgggatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG