1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TTCTCCCCTCCTCTTCCTCCGCCGCTGCATCGCCGTCCCAGGAACTTGGACACGTCGCCTCTCGCCGGCGACCATGTACCGCGCCCTCCGCTCTCTCAAGgtttccccgtctgcacccccccaaccttctacgacgtgtggcgttgcgtgtctcgatccatttgggatgaatgcgctggagtgttagatccaaacatgtg...
species | Oryza sativa |
transcript | LOC_Os05g44916.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CACGTCGCCTCTCGCCGGCGACCATGTACCGCGCCCTCCGCTCTCTCAAG CATCATGGTGCTAGTAGGTTTGCTAGTACAAGTGTTGTGAAGCAGTCTTCAEST: gi|88311332|gb|CI570406.1|CI570406
genomic: CACGTCGCCTCTCGCCGGCGACCATGTACCGCGCCCTCCGCTCTCTCAAGgtttccccgt ... cgactttcagCATCATGGTGCTAGTAGGTTTGCTAGTACAAGTGTTGTGAAGCAGTCTTCA
EST: CACGTCGCCTCTCGCCGGCGACCATGTACCGCGCCCTCCGCTCTCTCAAG CATCATGGTGCTAGTAGGTTTGCTAGTACAAGTGTTGTGAAGCAGTCTTCAEST: gi|58656395|gb|CK045075.1|CK045075
genomic: CACGTCGCCTCTCGCCGGCGACCATGTACCGCGCCCTCCGCTCTCTCAAGgtttccccgt ... cgactttcagCATCATGGTGCTAGTAGGTTTGCTAGTACAAGTGTTGTGAAGCAGTCTTCA
EST: ACGTCGCCGTCTCGCCGGCGACCATGTACCGCGCCCTCCGCTCTCTCAAG CATCATGGTGCTAGTAGGTTTGCTAGTACAAGTGTTGTGAAGCAGTCTTCAEST: gi|88359725|gb|CI622415.1|CI622415
genomic: ACGTCGCC-TCTCGCCGGCGACCATGTACCGCGCCCTCCGCTCTCTCAAGgtttccccgt ... cgactttcagCATCATGGTGCTAGTAGGTTTGCTAGTACAAGTGTTGTGAAGCAGTCTTCA
EST: CACGTCGCCTCTCGCCGGCGACCATGTACCGCGCCCTCCGCTCTCTCAAG CATCATGGTGCTAGTAGGTTTGCTAGTACAAGTGTTGTGAAGCAGTCTTCAEST: gi|33654804|gb|CF277418.1|CF277418
genomic: CACGTCGCCTCTCGCCGGCGACCATGTACCGCGCCCTCCGCTCTCTCAAGgtttccccgt ... cgactttcagCATCATGGTGCTAGTAGGTTTGCTAGTACAAGTGTTGTGAAGCAGTCTTCA
EST: CACGTCGCCTCTCGCCGGCGACCATGTACCGCGCCCTCCGCTCTCTCAAG CATCATGGTGCTAGTAGGTTTGCTAGTACAAGTGTTGTGAAGCAGTCTTCAEST: gi|88407589|gb|CI586430.1|CI586430
genomic: CACGTCGCCTCTCGCCGGCGACCATGTACCGCGCCCTCCGCTCTCTCAAGgtttccccgt ... cgactttcagCATCATGGTGCTAGTAGGTTTGCTAGTACAAGTGTTGTGAAGCAGTCTTCA
EST: CACGTCGCCTCTCGCCGGCGACCATGTACCGCGCCCTCCGCTCTCTCAAG CATCATGGTGCTAGTAGGTTTGCTAGTACAAGTGTTGTGAAGCAGTCTTCA
genomic: CACGTCGCCTCTCGCCGGCGACCATGTACCGCGCCCTCCGCTCTCTCAAGgtttccccgt ... cgactttcagCATCATGGTGCTAGTAGGTTTGCTAGTACAAGTGTTGTGAAGCAGTCTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTCCCCTCCTCTTCCTCCGCCGCTGCATCGCCGTCCCAGGAACTTGGACACGTCGCCTCTCGCCGGCGACCATGTACCGCGCCCTCCGCTCTCTCAAGgtttccccgtctgcacccccccaaccttctacgacgtgtggcgttgcgtgtctcgatccatttgggatgaatgcgctggagtgttagatccaaacatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccccc