1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCTCGGACGCCATGGTCACCGAGATGGAGCGAGGCCTGCGCGGGGACAGCCACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGGgtaagcgcctcgattccgatctgatgtctgattcctttcgtttttcgtattatgtttcctttcgtttttagtattatgggtttggaactttgtgatctaa...
species | Oryza sativa |
transcript | LOC_Os05g44760.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGG AAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAACCTTCCEST: gi|58676584|gb|CK065271.1|CK065271
genomic: CACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGGgtaagcgcct ... ccctttgcagAAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAAC-TTCC
EST: CACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGG AAATGAACAGGGGTTGTTTTATGCGTTGGATCTTGGAGGAACCAACTTCCGEST: gi|4880012|gb|AU064311.1|AU064311
genomic: CACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGGgtaagcgcct ... ccctttgcagAAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAACTTCCG
EST: CACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGG AAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAACTTCCGEST: gi|29629656|gb|CB634665.1|CB634665
genomic: CACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGGgtaagcgcct ... ccctttgcagAAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAACTTCCG
EST: CACGCCATGGTCAAGATGCTTATCACCTACGTCGACAACCTCCCCACCGG AAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAACTTCCGEST: gi|58667655|gb|CK056341.1|CK056341
genomic: CACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGGgtaagcgcct ... ccctttgcagAAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAACTTCCG
EST: CACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGG AAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAACTTCCGEST: gi|11172387|gb|AU164259.1|AU164259
genomic: CACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGGgtaagcgcct ... ccctttgcagAAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAACTTCCG
EST: CACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGG AAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAACTTCCGEST: gi|8404574|gb|AU091928.1|AU091928
genomic: CACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGGgtaagcgcct ... ccctttgcagAAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAACTTCCG
EST: CACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGG AAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAACTTCCG
genomic: CACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGGgtaagcgcct ... ccctttgcagAAATGAACAGGGGTTGTTTTATGCATTGGATCTTGGAGGAACCAACTTCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCGGACGCCATGGTCACCGAGATGGAGCGAGGCCTGCGCGGGGACAGCCACGCCATGGTTAAGATGCTCATCACCTACGTCGACAACCTCCCCACCGGgtaagcgcctcgattccgatctgatgtctgattcctttcgtttttcgtattatgtttcctttcgtttttagtattatgggtttggaactttgtgatctaa
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