1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTCCGCCGTGGGGAAGGGAGCAATCGGCAAGCCAATCCAATCCGGTTGCTTCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctcctcgcgctccccctcccgcttccgccgccgccgccgcttgggttgcccgtcgatcatgcgtcccgcggattgggggctcggtttttttgt...
species | Oryza sativa |
transcript | LOC_Os05g43540.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCCGCNCCGCNCAG GCTGTNGAGTTATNACGTATTTGATTATGGATCTGCCATTGATGGCTGNTAEST: gi|33691826|gb|CF320065.1|CF320065
genomic: ACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACATATTTGATTATGGATCTGCCATTGATGGCTGCTAEST: gi|87017390|gb|CI287930.1|CI287930
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTAEST: gi|88396750|gb|CI620083.1|CI620083
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTAEST: gi|88744411|gb|CI767771.1|CI767771
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCCAEST: gi|88738580|gb|CI762088.1|CI762088
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTAEST: gi|88732544|gb|CI755721.1|CI755721
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTAEST: gi|88299491|gb|CI574604.1|CI574604
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTAEST: gi|88733324|gb|CI756501.1|CI756501
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTAEST: gi|88324944|gb|CI644955.1|CI644955
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTAEST: gi|88731489|gb|CI755102.1|CI755102
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTAEST: gi|88317525|gb|CI672101.1|CI672101
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTAEST: gi|88362871|gb|CI614227.1|CI614227
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTAEST: gi|29666719|gb|CB662994.1|CB662994
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTAEST: gi|88724208|gb|CI747467.1|CI747467
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTAEST: gi|88407568|gb|CI586409.1|CI586409
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGGTTATGGATCTGCCATTGATGGCTGCTAEST: gi|88732137|gb|CI757314.1|CI757314
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTAEST: gi|88386133|gb|CI570768.1|CI570768
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTAEST: gi|88377308|gb|CI600463.1|CI600463
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTAEST: gi|88592808|gb|CI710936.1|CI710936
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTAEST: gi|88402501|gb|CI598728.1|CI598728
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTAEST: gi|88406052|gb|CI593832.1|CI593832
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTAEST: gi|66920779|gb|CX107627.1|CX107627
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTAEST: gi|88311212|gb|CI570286.1|CI570286
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
EST: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAG GCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
genomic: TCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctc ... tcctcattagGCTGTTGAGTTATCACGTATTTGATTATGGATCTGCCATTGATGGCTGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCGCCGTGGGGAAGGGAGCAATCGGCAAGCCAATCCAATCCGGTTGCTTCTCCTCCAATCCAACCTCGTCGGCGGCGGCGGCGACCCGCGCCGCGCAGgtgaggcctcctcgcgctccccctcccgcttccgccgccgccgccgcttgggttgcccgtcgatcatgcgtcccgcggattgggggctcggtttttttgt
- - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtcccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggggct